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[180435_at]

Description F52C6.8 /REP_DB=WormBase Gene ID /WP=CE10816 /TR=O44815 /GB=AAB94974.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 08      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 20.8
(-3)
A 		26.1
(-1.8)
A 		36.1
(0.5)
A 		47.4
(3)
A 		27
B 6.8
(-3)
A 		8.8
(-1.6)
A 		14.3
(2.1)
A 		15.6
(3)
A 		9
C 17.6
(-1.9)
A 		12.3
(-3)
A 		19.4
(-1.5)
A 		40.2
(3)
M 		28
avr 15.1
(-3) 		15.7
(-2.8) 		23.3
(-0.5) 		34.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 5.4
(-2.8)
A 		5.4
(-2.8)
A 		46
(-0.6)
P 		1.9
(-3)
A 		48.3
(-0.5)
P 		114.1
(3)
P 		112
B 24.6
(-1.9)
A 		19.1
(-2.2)
A 		17.4
(-2.3)
A 		3.8
(-3)
A 		75.3
(0.9)
P 		114.8
(3)
P 		111
C 5.1
(-3)
A 		23.7
(-2)
A 		25
(-1.9)
A 		18.7
(-2.3)
A 		45.4
(-0.8)
A 		114.8
(3)
P 		110
avr 11.7
(-2.8) 		16.1
(-2.5) 		29.5
(-1.8) 		8.1
(-3) 		56.3
(-0.3) 		114.6
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.6
(0.1)
A 		5.7
(-3)
A 		9.4
(3)
A 		6.9
(-1.1)
A 		4
B 2.2
(-3)
A 		2.2
(-3)
A 		3.3
(3)
A 		3.3
(3)
A 		1
C 5.8
(1.2)
A 		3.5
(-3)
A 		6.8
(3)
A 		6.8
(3)
M 		3
avr 5.2
(0.1) 		3.8
(-3) 		6.5
(3) 		5.7
(1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1
(-2.9)
A 		1.9
(-2.7)
A 		10
(-0.9)
P 		0.5
(-3)
A 		14.6
(0.1)
P 		27.8
(3)
P 		27
B 8.6
(-1.9)
A 		6.4
(-2.2)
A 		4.2
(-2.5)
A 		1
(-3)
A 		30.6
(1.2)
P 		42.8
(3)
P 		42
C 1.9
(-3)
A 		7.2
(-2.1)
A 		6.4
(-2.3)
A 		3.8
(-2.7)
A 		14.7
(-0.9)
A 		38.4
(3)
P 		37
avr 3.8
(-2.7) 		5.2
(-2.4) 		6.9
(-2.1) 		1.8
(-3) 		20
(0.2) 		36.3
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5265
Sequence Type Exemplar sequence
Representative Public ID F52C6.8 NCBI
Target Description F52C6.8 /REP_DB=WormBase Gene ID /WP=CE10816 /TR=O44815 /GB=AAB94974.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061721 NCBI Caenorhabditis elegans F52C6.8 (F52C6.8) mRNA, complete cds. 11/11 A 
SNAP00000005720 ENSEMBL cdna:SNAP chromosome:CEL140:II:1913607:1917954:-1 11/11 None
GENEFINDER00000005741 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1916800:1917781:-1 11/11 None
F52C6.8 ENSEMBL cdna:known chromosome:CEL140:II:1916800:1917954:-1 gene:F52C6.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1916798-1917953(-) 100.0 100.0
chrII:2029324-2030463(-) 93.27 93.27
Public Domain and Genome References
Gene Title
Gene Symbol bath-4
Ensembl F52C6.8
Entrez Gene 186090 Entrez gene
SwissProt O44815 EMBL-EBI
WormBase CE10816 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-158
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-157
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-147
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-145
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 1.0E-143
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 1.0E-141
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.1E-39
Pfam IPR002083 EMBL-EBI MATH 2.7E-25
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-39
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.7E-31
Pfam IPR002083 EMBL-EBI MATH 7.3E-26
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-39
Sequence
Target Sequence 
>C. ELEGANS:180435_AT
ttattatcgctgaggcaactgtaaaggtcactaatatgactggaattctgaagaaaaagc
tcaaaagcttcgaaaaatctgaggaacaattttccgatgtaattctcgctgttgaagatg
aaacattccatgttttgaagaaattcctggcctcccattccacatatttcaacgctcttc
ttctcgggaaattcaaggaagccgagatttcagaagtcgcgctcaaggacattgattcca
cggattttcagaatcttttggaggttttgtatggcgaatcggctattgatgaagacacca
tcgaaggaattctccacctggcccacatgtatgatatgccatttccaacccgaaaatgcg
aggaattcctcatcgatttttctgaaaaaccaattaaggagaagctcaaagtcgctaaaa
agtatcagctggaggatttgaagatgtcctgcctcatgaaaaccaatacaatcgatgaaa
tcaaggcggcgttggccggagattccactgaaatggatgtgactgtcctggcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTATCGCTGAGGCAACTGTAAA 111 679 368 Antisense
GAGGCAACTGTAAAGGTCACTAATA 478 405 379 Antisense
GGAGGTTTTGTATGGCGAATCGGCT 108 515 627 Antisense
TGGCGAATCGGCTATTGATGAAGAC 316 545 639 Antisense
TCCACCTGGCCCACATGTATGATAT 660 587 680 Antisense
GGAGGATTTGAAGATGTCCTGCCTC 111 517 798 Antisense
CCTGCCTCATGAAAACCAATACAAT 156 267 815 Antisense
GAAATCAAGGCGGCGTTGGCCGGAG 421 357 844 Antisense
CAAGGCGGCGTTGGCCGGAGATTCC 238 167 849 Antisense
GTTGGCCGGAGATTCCACTGAAATG 658 435 858 Antisense
AAATGGATGTGACTGTCCTGGCGGC 662 119 878 Antisense
Sequence Source Affymetrix Proprietary Database