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[180433_at]

Description K07F5.12 /REP_DB=WormBase Gene ID /WP=CE23856 /TR=Q9U3C0 /GB=CAB54279.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 17      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 52.1
(-3)
P 		110.3
(-1.9)
P 		123.6
(-1.6)
P 		362.1
(3)
P 		310
B 73.7
(-3)
P 		111.2
(-2.3)
P 		128.1
(-2)
P 		412.6
(3)
P 		339
C 74.9
(-3)
P 		161.6
(-1.2)
P 		137
(-1.7)
P 		368.5
(3)
P 		294
avr 66.9
(-3) 		127.7
(-1.8) 		129.6
(-1.8) 		381.1
(3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 42.7
(-3)
P 		96.3
(-2.2)
P 		139
(-1.5)
P 		170.9
(-1)
P 		280.5
(0.7)
P 		424.1
(3)
P 		381
B 133.9
(-2.3)
P 		89
(-3)
P 		123.5
(-2.5)
P 		182.9
(-1.5)
P 		367.3
(1.3)
P 		474.9
(3)
P 		386
C 95.4
(-3)
P 		104.7
(-2.8)
P 		95.9
(-3)
P 		178.6
(-1.6)
P 		232.5
(-0.6)
P 		439.9
(3)
P 		345
avr 90.7
(-3) 		96.7
(-2.9) 		119.5
(-2.5) 		177.5
(-1.5) 		293.4
(0.4) 		446.3
(3) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 19
(-3)
P 		24
(-2.1)
P 		32.3
(-0.7)
P 		53
(3)
P 		34
B 23.5
(-3)
P 		27.5
(-2.6)
P 		29.7
(-2.4)
P 		87.9
(3)
P 		64
C 24.8
(-3)
P 		46.5
(0.5)
P 		47.8
(0.7)
P 		62.1
(3)
P 		37
avr 22.4
(-3) 		32.7
(-1.6) 		36.6
(-1.1) 		67.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 7.9
(-3)
P 		34.3
(-1.3)
P 		30.3
(-1.6)
P 		43.3
(-0.8)
P 		84.6
(1.8)
P 		103.2
(3)
P 		95
B 46.6
(-2.3)
P 		29.6
(-3)
P 		30
(-3)
P 		48.4
(-2.2)
P 		149.2
(1.9)
P 		177.1
(3)
P 		148
C 35.4
(-2.5)
P 		31.9
(-2.6)
P 		24.4
(-3)
P 		35.9
(-2.4)
P 		75.2
(-0.5)
P 		147.3
(3)
P 		123
avr 30
(-2.9) 		31.9
(-2.8) 		28.2
(-3) 		42.5
(-2.2) 		103
(0.9) 		142.5
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10278
Sequence Type Exemplar sequence
Representative Public ID K07F5.12 NCBI
Target Description K07F5.12 /REP_DB=WormBase Gene ID /WP=CE23856 /TR=Q9U3C0 /GB=CAB54279.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069368 NCBI Caenorhabditis elegans K07F5.12 (K07F5.12) mRNA, complete cds. 11/11 None
SNAP00000004254 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9855991:9857959:1 11/11 None
K07F5.12 ENSEMBL cdna:known chromosome:CEL140:IV:9855991:9857959:1 gene:K07F5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004260 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9855996-9857965(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07F5.12
Entrez Gene 187119 Entrez gene
WormBase CE23856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54279 Hypothetical protein K07F5.12 [Caenorhabditis elegans] ref|NP_501769.1| K07F5.12 [Caenorhabditis elegans] 0.0
blast B88794 protein K07F5.12a [imported] - Caenorhabditis elegans 0.0
blast CAE59980 Hypothetical protein CBG03472 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501769.1 9 15-37,44-66,70-92,99-121,136-155,198-217,237-259,268-290,327-349
K07F5.12 9 15-37,44-66,70-92,99-121,136-155,198-217,237-259,268-290,327-349
SNAP00000004254 9 15-37,44-66,70-92,99-121,136-155,198-217,237-259,268-290,327-349
Sequence
Target Sequence 
>C. ELEGANS:180433_AT
gagtggagttcttttgatattcgtgaaacacgtggaaacggagccagaaaatgaatatga
tgtgaccagcaaggaaatggaacatcaagaagagattgagcaaagactcagcaattcaga
aagagattcttcatttgatatggctggtttggcaaagaaattaccttatatccttatggc
aatggttcttgcgtgtctacatggtttgatgatgtcaccgattgaatatttgaagcaaca
gaatccaccaactgatagtttccaagtgtttgactatattttcccattctacacatcagt
attcctcttctctacactgtatttcttcgcgtattgtgtaattttgcgtcgaaaagccta
cgtggaaaggaatttgataattccatcgattgggtacggtattttatggactacaggaat
gacactttggtttgtctccagtgataaattatctcaagttgttgcctatccatgtaccgc
ccgtcttccaccgttaattagtggagctcttgatgtatttgtattcaagagtattcaagg
aacccgatcatatgctacgttggcaatttcttctgttattggtgtcatttcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGAGTTCTTTTGATATTCGTG 627 401 444 Antisense
GAAATTACCTTATATCCTTATGGCA 269 361 600 Antisense
AATGGTTCTTGCGTGTCTACATGGT 381 163 624 Antisense
GAATCCACCAACTGATAGTTTCCAA 56 331 684 Antisense
TCTACACATCAGTATTCCTCTTCTC 90 615 731 Antisense
TCTCTACACTGTATTTCTTCGCGTA 434 611 752 Antisense
GACACTTTGGTTTGTCTCCAGTGAT 217 365 864 Antisense
TCAAGTTGTTGCCTATCCATGTACC 121 633 897 Antisense
GAACCCGATCATATGCTACGTTGGC 377 343 983 Antisense
CTACGTTGGCAATTTCTTCTGTTAT 487 225 998 Antisense
CTTCTGTTATTGGTGTCATTTCGGT 104 221 1013 Antisense
Sequence Source Affymetrix Proprietary Database