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[180432_at]

Description Y48A6C.4 /REP_DB=WormBase Gene ID /WP=CE19199 /TR=Q9XWK5 /GB=CAA21654.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 90      6grp_total > 11      4grp_total > 59      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 158.6
(0.9)
P 		167.5
(1.4)
P 		195.7
(3)
P 		87.4
(-3)
P 		108
B 175.2
(3)
P 		173.6
(2.9)
P 		171.5
(2.7)
P 		97.4
(-3)
P 		78
C 117
(-3)
P 		192.7
(2.8)
P 		194.9
(3)
P 		142.6
(-1)
P 		78
avr 150.3
(0.2) 		177.9
(2.3) 		187.4
(3) 		109.1
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 159.7
(0.9)
P 		204.3
(3)
P 		142.3
(0.1)
P 		114.1
(-1.2)
P 		76.6
(-3)
P 		123
(-0.8)
P 		128
B 150.7
(0.8)
P 		180.2
(3)
P 		139.8
(0)
P 		147.6
(0.6)
P 		98.6
(-3)
P 		139.2
(-0)
P 		82
C 98.8
(-2.1)
P 		188
(3)
P 		140.4
(0.3)
P 		147.3
(0.7)
P 		83.6
(-3)
P 		151.4
(0.9)
P 		104
avr 136.4
(-0.1) 		190.8
(3) 		140.8
(0.1) 		136.3
(-0.1) 		86.3
(-3) 		137.9
(-0) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 57.8
(3)
P 		36.4
(0.1)
P 		51.2
(2.1)
P 		12.8
(-3)
P 		45
B 55.9
(3)
P 		42.9
(0.8)
P 		39.8
(0.2)
P 		20.8
(-3)
P 		35
C 38.7
(-1)
P 		55.4
(1.3)
P 		67.9
(3)
P 		24
(-3)
P 		44
avr 50.8
(2.6) 		44.9
(1.6) 		53
(3) 		19.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 29.4
(-2.2)
P 		72.7
(3)
P 		31
(-2)
P 		28.9
(-2.3)
P 		23.1
(-3)
P 		29.9
(-2.2)
P 		50
B 52.4
(1.2)
P 		60
(3)
P 		34
(-3)
P 		39.1
(-1.8)
P 		40.1
(-1.6)
P 		51.9
(1.1)
P 		26
C 36.6
(-1.1)
P 		57.4
(3)
P 		35.7
(-1.3)
P 		29.6
(-2.5)
P 		27
(-3)
P 		50.7
(1.7)
P 		30
avr 39.5
(-1.3) 		63.4
(3) 		33.6
(-2.4) 		32.5
(-2.6) 		30.1
(-3) 		44.2
(-0.5) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7356
Sequence Type Exemplar sequence
Representative Public ID Y48A6C.4 NCBI
Target Description Y48A6C.4 /REP_DB=WormBase Gene ID /WP=CE19199 /TR=Q9XWK5 /GB=CAA21654.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067032 NCBI Caenorhabditis elegans Y48A6C.4 (Y48A6C.4) mRNA, complete cds. 11/11 A 
SNAP00000028337 ENSEMBL cdna:SNAP chromosome:CEL140:III:11119680:11123001:1 11/11 None
GENEFINDER00000028340 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11119680:11123001:1 11/11 None
Y48A6C.4 ENSEMBL cdna:known chromosome:CEL140:III:11119680:11123001:1 gene:Y48A6C.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028333 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11119675-11122997(+) 100.0 100.0
chrIII:11102325-11104988(-) 56.28 56.28
Public Domain and Genome References
Gene Title
Ensembl Y48A6C.4
Entrez Gene 190016 Entrez gene
SwissProt Q9XWK5 EMBL-EBI
WormBase CE19199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21654 Hypothetical protein Y48A6C.4 [Caenorhabditis elegans] ref|NP_499433.1| Y48A6C.4 [Caenorhabditis elegans] 1.0E-172
blast CAE67629 Hypothetical protein CBG13183 [Caenorhabditis briggsae] 1.0E-148
blast CAA21651 Hypothetical protein Y48A6C.1 [Caenorhabditis elegans] ref|NP_499430.1| Y48A6C.1 [Caenorhabditis elegans] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:180432_AT
attctgtgtacagcttcaattcaagcaatgtcggctcatatcacacttttcctgtcccac
gtgctccgcgctctaacgaatatcgtcacagaagtccgccacctcgcactgagcacactt
tcggtgcttctcgatcgatatccgagcctttgccggaatcatgccgatctcttcccctgt
tttatcaattatctgggcagttcgaagcgtctggcgtggaataagccgggattaatcgat
acaattctcaatttcatcaatatttacgatataaatcgagaacgacacgtggatccttcc
accctggaaatccgattcgaaaatgagaaaatcgagggaaaaagtgatttgaaacgagtt
tttgtgcagaatcccgacgtgagcccattcgaatttggagttgtgagctcatcgaaatcc
aatgcagtttcaccatttgagctgccggatgctttgctcaatttggcaaatgtactggcg
ccaattatttcaaatatcgttctggaagacgctggtggtcaattcatgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTGTGTACAGCTTCAATTCAAG 120 11 400 Antisense
AATGTCGGCTCATATCACACTTTTC 606 163 426 Antisense
CTCGCACTGAGCACACTTTCGGTGC 468 231 502 Antisense
TTTCGGTGCTTCTCGATCGATATCC 326 671 518 Antisense
TCGATATCCGAGCCTTTGCCGGAAT 637 603 534 Antisense
TTTGCCGGAATCATGCCGATCTCTT 433 667 548 Antisense
TCTCTTCCCCTGTTTTATCAATTAT 213 613 567 Antisense
ATCTGGGCAGTTCGAAGCGTCTGGC 73 33 590 Antisense
GCGTCTGGCGTGGAATAAGCCGGGA 153 289 606 Antisense
AATATCGTTCTGGAAGACGCTGGTG 615 173 892 Antisense
GACGCTGGTGGTCAATTCATGATTC 141 381 907 Antisense
Sequence Source Affymetrix Proprietary Database