[Home] | [Total List]

[180431_at]

Description F40G12.6 /REP_DB=WormBase Gene ID /WP=CE10186 /TR=Q20245 /GB=CAB01182.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 113.7
(0.1)
P 		139.2
(1.2)
A 		40.8
(-3)
A 		182.1
(3)
P 		141
B 99.1
(-1)
P 		37.8
(-3)
A 		73.3
(-1.8)
A 		222.5
(3)
P 		185
C 140
(-0.9)
P 		79.6
(-2.9)
A 		75.2
(-3)
A 		264.8
(3)
P 		190
avr 117.6
(-1) 		85.5
(-2.2) 		63.1
(-3) 		223.1
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 130.9
(-0.4)
A 		119.8
(-0.9)
P 		201
(3)
P 		127.8
(-0.5)
P 		91.3
(-2.3)
A 		75.8
(-3)
A 		125
B 100.9
(-1.4)
P 		134.1
(0.3)
P 		185.1
(3)
P 		96.3
(-1.6)
A 		70
(-3)
A 		106
(-1.1)
P 		115
C 85.2
(-1.9)
P 		147.7
(3)
P 		125.8
(1.3)
A 		140.6
(2.4)
P 		71
(-3)
M 		108.7
(-0.1)
P 		77
avr 105.7
(-1.2) 		133.9
(0.6) 		170.6
(3) 		121.6
(-0.2) 		77.4
(-3) 		96.8
(-1.8) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 41.4
(3)
P 		30.2
(0.8)
A 		10.7
(-3)
A 		26.7
(0.1)
P 		31
B 31.6
(0.5)
P 		9.3
(-3)
A 		17
(-1.8)
A 		47.4
(3)
P 		38
C 46.3
(3)
P 		22.9
(-3)
A 		26.2
(-2.2)
A 		44.7
(2.6)
P 		23
avr 39.8
(3) 		20.8
(-2.2) 		18
(-3) 		39.6
(2.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 24.1
(-1.7)
A 		42.6
(2.7)
P 		43.8
(3)
P 		32.4
(0.3)
P 		27.5
(-0.9)
A 		18.5
(-3)
A 		25
B 35.1
(-0)
P 		44.6
(2.9)
P 		45
(3)
P 		25.5
(-3)
A 		28.4
(-2.1)
A 		39.5
(1.3)
P 		20
C 31.6
(-0.7)
P 		45.1
(3)
P 		32
(-0.6)
A 		28.3
(-1.6)
P 		23
(-3)
M 		36.4
(0.6)
P 		22
avr 30.3
(-1.7) 		44.1
(3) 		40.3
(1.7) 		28.7
(-2.2) 		26.3
(-3) 		31.5
(-1.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12737
Sequence Type Exemplar sequence
Representative Public ID F40G12.6 NCBI
Target Description F40G12.6 /REP_DB=WormBase Gene ID /WP=CE10186 /TR=Q20245 /GB=CAB01182.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074132 NCBI Caenorhabditis elegans F40G12.6 (F40G12.6) mRNA, complete cds. 11/11 None
SNAP00000026730 ENSEMBL cdna:SNAP chromosome:CEL140:V:14273825:14275635:-1 11/11 None
GENEFINDER00000026762 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14273825:14275635:-1 11/11 None
F40G12.6 ENSEMBL cdna:known chromosome:CEL140:V:14273825:14275635:-1 gene:F40G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14273824-14275635(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G12.6
Entrez Gene 185566 Entrez gene
SwissProt Q20245 EMBL-EBI
WormBase CE10186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01182 Hypothetical protein F40G12.6 [Caenorhabditis elegans] ref|NP_506533.1| F40G12.6 [Caenorhabditis elegans] 0.0
blast AAA98574 Hypothetical protein C12D5.9 [Caenorhabditis elegans] ref|NP_504991.1| C12D5.9 [Caenorhabditis elegans] 9.0E-21
blast NP_001024081 R13D7.2 [Caenorhabditis elegans] gb|AAK72299.1| Hypothetical protein R13D7.2 [Caenorhabditis elegans] 8.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 2.9E-47
Sequence
Target Sequence 
>C. ELEGANS:180431_AT
atgtgtcactctgctgcttatagttatctgaaaatccactataatttgttgtcagatact
ttatcaattaagccagaaaatgataattgtgaaagtctccattctgaattgatccgtgaa
cagtgtgaattggtagaagcaaaaattatgaatttttcaagaaaaacggatgatgaaagt
ctgtctgcaaataatacgattagtgccgaaagtgggcatctctgcgaggttctacagcaa
tgcagagaagatgagtgcaactttattaatcctgaaagggaattcgagatttgtggagtt
ttcccatcaaatgatacagaaacaagtggaaattcaacaattattgaactgtatggagcg
ttacgttcccccattcaagtcaattcagaagttggaacatgtgcatcaattgtcgatgaa
tttgcatttattgtttctgaaaatacgattagtagttctcctgcttatgagtacactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTCACTCTGCTGCTTATAGTT 608 49 454 Antisense
AAGTCTCCATTCTGAATTGATCCGT 146 159 546 Antisense
GGATGATGAAAGTCTGTCTGCAAAT 553 513 621 Antisense
AAAGTGGGCATCTCTGCGAGGTTCT 305 121 662 Antisense
GCGAGGTTCTACAGCAATGCAGAGA 646 289 677 Antisense
GAGTGCAACTTTATTAATCCTGAAA 386 401 706 Antisense
GAGATTTGTGGAGTTTTCCCATCAA 433 397 739 Antisense
GAACTGTATGGAGCGTTACGTTCCC 330 345 799 Antisense
TTCCCCCATTCAAGTCAATTCAGAA 308 699 819 Antisense
ATACGATTAGTAGTTCTCCTGCTTA 634 23 896 Antisense
GTTCTCCTGCTTATGAGTACACTCT 376 443 908 Antisense
Sequence Source Affymetrix Proprietary Database