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[180430_at]

Description C17B7.5 /REP_DB=WormBase Gene ID /WP=CE16853 /TR=O45155 /GB=AAC04399.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 11.3
(-1.7)
A 		4.2
(-2.8)
A 		2.6
(-3)
A 		43
(3)
A 		40
B 1.5
(-3)
A 		6.9
(-1.8)
A 		1.9
(-2.9)
A 		28.1
(3)
A 		27
C 1
(-3)
A 		1.9
(-2.9)
A 		6
(-2.5)
A 		55.7
(3)
P 		55
avr 4.6
(-2.8) 		4.3
(-2.9) 		3.5
(-3) 		42.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.1
(-3)
A 		48.2
(3)
P 		14.9
(-1.2)
A 		23.5
(-0.1)
A 		5.4
(-2.4)
A 		47
B 6.7
(-3)
A 		28.3
(-0.5)
A 		58.7
(3)
M 		16.5
(-1.9)
A 		45.4
(1.5)
P 		18
(-1.7)
A 		52
C 2.6
(-3)
A 		21.4
(-1)
A 		13.9
(-1.8)
A 		57.7
(3)
P 		12.2
(-2)
A 		24.4
(-0.6)
P 		55
avr 3.4
(-3) 		16.9
(-0.8) 		40.3
(3) 		29.7
(1.3) 		27
(0.8) 		15.9
(-1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(0.6)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		6.3
(3)
A 		6
B 0.5
(-2.9)
A 		1.7
(-1.6)
A 		0.4
(-3)
A 		6
(3)
A 		6
C 0.3
(-3)
A 		0.5
(-2.9)
A 		2.1
(-1.8)
A 		9.4
(3)
P 		9
avr 1.6
(-2.4) 		1
(-3) 		1.1
(-2.9) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.4
(-2.9)
A 		10.5
(3)
P 		3.8
(-0.9)
A 		7.1
(1)
A 		1.3
(-2.4)
A 		10
B 2.3
(-3)
A 		9.4
(-0.4)
A 		14.3
(1.4)
M 		4.4
(-2.2)
A 		18.5
(3)
P 		6.7
(-1.4)
A 		16
C 1
(-3)
A 		6.5
(0.1)
A 		3.5
(-1.6)
A 		11.6
(3)
P 		3.9
(-1.4)
A 		8.2
(1.1)
P 		11
avr 1.2
(-3) 		5.4
(-0.1) 		9.4
(2.7) 		6.6
(0.8) 		9.8
(3) 		5.4
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14818
Sequence Type Exemplar sequence
Representative Public ID C17B7.5 NCBI
Target Description C17B7.5 /REP_DB=WormBase Gene ID /WP=CE16853 /TR=O45155 /GB=AAC04399.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071524 NCBI Caenorhabditis elegans C17B7.5 (C17B7.5) mRNA, complete cds. 11/11 None
SNAP00000020307 ENSEMBL cdna:SNAP chromosome:CEL140:V:3334366:3338749:1 11/11 None
GENEFINDER00000020319 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3333535:3338756:1 11/11 None
C17B7.5 ENSEMBL cdna:known chromosome:CEL140:V:3333467:3338831:1 gene:C17B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3333534-3338749(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17B7.5
Entrez Gene 178766 Entrez gene
SwissProt O45155 EMBL-EBI
WormBase CE16853 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04399 Hypothetical protein C17B7.5 [Caenorhabditis elegans] ref|NP_503925.1| C17B7.5 [Caenorhabditis elegans] 0.0
blast AAC27095 Hypothetical protein C04E12.10 [Caenorhabditis elegans] ref|NP_503941.1| C04E12.10 [Caenorhabditis elegans] 0.0
blast AAF99935 Hypothetical protein F35F10.10 [Caenorhabditis elegans] ref|NP_503914.1| F35F10.10 [Caenorhabditis elegans] 0.0
blast AAC27095 Hypothetical protein C04E12.10 [Caenorhabditis elegans] ref|NP_503941.1| C04E12.10 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
scop a.4.5.SCF ubiquitin ligase complex WHB domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; SCF ubiquitin ligase complex WHB domain 0.769999980926514
scop a.4.5.SCF ubiquitin ligase complex WHB domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; SCF ubiquitin ligase complex WHB domain 0.839999973773956
scop a.4.5.SCF ubiquitin ligase complex WHB domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; SCF ubiquitin ligase complex WHB domain 1.29999995231628
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.1E-5
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.4E-21
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.6E-43
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.1E-5
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 6.3E-31
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.6E-43
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.6E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503925.1 1 34-56
C17B7.5 1 34-56
GENEFINDER00000020319 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:180430_AT
taatctcaacgccattactagcttggcggcaagggcatatcgatttgggacgaatatcaa
gagaaaaccatgtgaaattcacgtacgatgtcatgagggacacgtattcacacactcagc
tgaatggatcttcatatgtaccgtataatgttgccaatattgaacgagtagtggataagc
gactgaatcaagtttatttacataggaacgattcaaaaaaagatacttatttaaattggg
tattcgatatgacgatcgatgggaaagttgtagacaaattgacaattaaagtacccggaa
tggaacaacaacaactgggcattagagcgtcattagaaatttgtctaatttatggatacg
agaagtgcatcgcgattccgattagcggaggattgacgattgagtatcctcaattctcta
ttttcaagattgcatacacatgctacgaaaataaggaagacaacacggatctgatacttt
tcaaatctgaactgaaggaaggactcaatgtggaaagtctctcagtcgaagtcaactgga
ctaccaaaggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTCAACGCCATTACTAGCTTG 210 635 1892 Antisense
GCCATTACTAGCTTGGCGGCAAGGG 270 229 1902 Antisense
GGCGGCAAGGGCATATCGATTTGGG 518 539 1916 Antisense
TGTCATGAGGGACACGTATTCACAC 136 559 1980 Antisense
CACACACTCAGCTGAATGGATCTTC 289 193 2000 Antisense
GGAACAACAACAACTGGGCATTAGA 202 529 2193 Antisense
ACTGGGCATTAGAGCGTCATTAGAA 372 95 2205 Antisense
GTGCATCGCGATTCCGATTAGCGGA 346 481 2256 Antisense
TCAAGATTGCATACACATGCTACGA 123 633 2315 Antisense
GACAACACGGATCTGATACTTTTCA 361 365 2350 Antisense
AGTCAACTGGACTACCAAAGGACCA 211 61 2421 Antisense
Sequence Source Affymetrix Proprietary Database