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[180429_at]

Description K10H10.7 /REP_DB=WormBase Gene ID /WP=CE16256 /TR=O45684 /GB=CAB05783.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 59      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.6
(1.3)
A 		13.4
(3)
A 		10.5
(0.2)
A 		7.2
(-3)
A 		6
B 11.4
(2.3)
A 		12
(2.7)
A 		12.4
(3)
A 		3.5
(-3)
A 		9
C 8.2
(-2.9)
A 		9.6
(-1.5)
A 		14.1
(3)
A 		8.1
(-3)
A 		6
avr 10.4
(1.1) 		11.7
(2.4) 		12.3
(3) 		6.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 5.8
(-2.5)
A 		5
(-3)
A 		14.4
(2.9)
A 		14.5
(3)
A 		11.5
(1.1)
A 		13.4
(2.3)
A 		10
B 9.9
(-0.2)
A 		8
(-1.1)
A 		13.6
(1.5)
A 		8
(-1.1)
A 		16.7
(3)
A 		4.1
(-3)
A 		13
C 13.9
(-2.5)
A 		8.3
(-3)
A 		10.7
(-2.8)
A 		12.7
(-2.6)
A 		19.7
(-1.9)
A 		71.5
(3)
A 		63
avr 9.9
(-2.3) 		7.1
(-3) 		12.9
(-1.5) 		11.7
(-1.8) 		16
(-0.6) 		29.7
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.2
(3)
A 		2.9
(0.5)
A 		2.7
(0.1)
A 		1.1
(-3)
A 		3
B 3.6
(3)
A 		3
(1.8)
A 		2.9
(1.6)
A 		0.7
(-3)
A 		3
C 2.7
(-0.8)
A 		2.8
(-0.6)
A 		4.9
(3)
A 		1.4
(-3)
A 		4
avr 3.5
(3) 		2.9
(1.5) 		3.5
(3) 		1.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.8
(-1.4)
A 		3.1
(1.6)
A 		3.7
(3)
A 		3.5
(2.5)
A 		3.3
(2.1)
A 		3
B 3.4
(-0.8)
A 		2.6
(-1.8)
A 		3.3
(-1)
A 		2.1
(-2.3)
A 		6.8
(3)
A 		1.5
(-3)
A 		5
C 5.1
(-2.3)
A 		2.5
(-3)
A 		2.7
(-2.9)
A 		2.6
(-3)
A 		6.4
(-1.9)
A 		23.9
(3)
A 		21
avr 3.2
(-2.3) 		2.3
(-3) 		3
(-2.4) 		2.8
(-2.6) 		5.6
(-0.3) 		9.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3178
Sequence Type Exemplar sequence
Representative Public ID K10H10.7 NCBI
Target Description K10H10.7 /REP_DB=WormBase Gene ID /WP=CE16256 /TR=O45684 /GB=CAB05783.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064612 NCBI Caenorhabditis elegans K10H10.7 (K10H10.7) mRNA, complete cds. 11/11 None
SNAP00000031900 ENSEMBL cdna:SNAP chromosome:CEL140:II:14507076:14507522:-1 11/11 None
GENEFINDER00000031903 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14504934:14507522:-1 10/11 None
K10H10.7 ENSEMBL cdna:known chromosome:CEL140:II:14507076:14507522:-1 gene:K10H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14507072-14507519(-) 72.93 100.0
Public Domain and Genome References
Gene Title
Ensembl K10H10.7
Entrez Gene 187286 Entrez gene
SwissProt O45684 EMBL-EBI
WormBase CE16256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05783 Hypothetical protein K10H10.7 [Caenorhabditis elegans] ref|NP_497013.1| K10H10.7 [Caenorhabditis elegans] 1.0E-52
blast CAB05783 Hypothetical protein K10H10.7 [Caenorhabditis elegans] ref|NP_497013.1| K10H10.7 [Caenorhabditis elegans] 1.0E-49
blast CAE57922 Hypothetical protein CBG00975 [Caenorhabditis briggsae] 1.0E-34
blast CAE57922 Hypothetical protein CBG00975 [Caenorhabditis briggsae] 3.0E-33
blast CAE67804 Hypothetical protein CBG13382 [Caenorhabditis briggsae] 8.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031903 2 91-110,209-231
Sequence
Target Sequence 
>C. ELEGANS:180429_AT
ccaccacaactactctcgttgtcaagtctgaggaccaggaggaagttcaagaggagcacg
tgcttcgtctcagagcaccaccgagcccaccgcacgttacttgggctgaaggagttgttg
acaacgaacatatgggtcgtctgaagtccaactgctgctgcatctacgtggcaccacgtc
aatgggatgatccgtccacttgggagccgaatgagtacgagacggagcactgcagagggc
acacgttgccggagagaaagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACAACTACTCTCGTTGTCAA 556 273 29 Antisense
CTCGTTGTCAAGTCTGAGGACCAGG 265 231 43 Antisense
CAAGAGGAGCACGTGCTTCGTCTCA 91 185 76 Antisense
CCACCGCACGTTACTTGGGCTGAAG 174 275 115 Antisense
ATGGGTCGTCTGAAGTCCAACTGCT 280 51 160 Antisense
GCTGCATCTACGTGGCACCACGTCA 427 293 185 Antisense
GTCAATGGGATGATCCGTCCACTTG 444 463 206 Antisense
CCGTCCACTTGGGAGCCGAATGAGT 510 263 220 Antisense
ATGAGTACGAGACGGAGCACTGCAG 68 45 239 Antisense
AGCACTGCAGAGGGCACACGTTGCC 24 77 254 Antisense
GCACACGTTGCCGGAGAGAAAGAAG 453 317 267 Antisense
Sequence Source Affymetrix Proprietary Database