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[180428_at] 7TM receptor, sre family

Description Y39G8B.4 /REP_DB=WormBase Gene ID /WP=CE24246 /TR=Q9U2J1 /GB=CAB60340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 36      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 31.8
(-0.3)
A 		50.9
(3)
A 		16.4
(-3)
A 		42.9
(1.6)
A 		35
B 42.8
(3)
A 		12.6
(-2.3)
A 		8.5
(-3)
A 		22.6
(-0.5)
A 		34
C 17.5
(-0.2)
A 		28.8
(3)
A 		24.7
(1.8)
A 		7.7
(-3)
A 		21
avr 30.7
(3) 		30.8
(3) 		16.5
(-3) 		24.4
(0.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 15.9
(-1.6)
A 		52.8
(3)
A 		16.5
(-1.6)
A 		14.4
(-1.8)
A 		5.1
(-3)
A 		33.5
(0.6)
A 		48
B 4.9
(-3)
A 		13.1
(-1.4)
A 		13.2
(-1.4)
A 		5
(-3)
A 		35.6
(3)
A 		9.4
(-2.1)
A 		31
C 9.6
(-2.3)
A 		7.4
(-2.7)
A 		13.6
(-1.5)
A 		8.6
(-2.5)
A 		6.2
(-3)
A 		34.9
(3)
A 		29
avr 10.1
(-2.7) 		24.4
(2.5) 		14.4
(-1.2) 		9.3
(-3) 		15.6
(-0.7) 		25.9
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.6
(3)
A 		11.1
(2.6)
A 		4.3
(-3)
A 		6.3
(-1.4)
A 		7
B 13.7
(3)
A 		3.1
(-2.4)
A 		2
(-3)
A 		4.8
(-1.6)
A 		12
C 5.8
(0.7)
A 		8.3
(2.8)
A 		8.6
(3)
A 		1.3
(-3)
A 		7
avr 10.4
(3) 		7.5
(0.2) 		5
(-2.1) 		4.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.9
(-2.5)
A 		18.8
(3)
A 		3.6
(-2.3)
A 		3.7
(-2.2)
A 		1.5
(-3)
A 		8.1
(-0.7)
A 		17
B 1.7
(-2.8)
A 		4.4
(-1.6)
A 		3.2
(-2.1)
A 		1.3
(-3)
A 		14.5
(3)
A 		3.5
(-2)
A 		13
C 3.6
(-1.9)
A 		2.3
(-2.6)
A 		3.5
(-1.9)
A 		1.7
(-3)
A 		2
(-2.8)
A 		11.7
(3)
A 		10
avr 2.7
(-2.5) 		8.5
(3) 		3.4
(-1.9) 		2.2
(-3) 		6
(0.6) 		7.8
(2.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3431
Sequence Type Exemplar sequence
Representative Public ID Y39G8B.4 NCBI
Target Description Y39G8B.4 /REP_DB=WormBase Gene ID /WP=CE24246 /TR=Q9U2J1 /GB=CAB60340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064527 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-47) (sre-47) mRNA, complete cds. 11/11 None
Y39G8B.4 ENSEMBL cdna:known chromosome:CEL140:II:13983289:13984573:-1 gene:Y39G8B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038676 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13983285-13984570(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-47
Ensembl Y39G8B.4
Entrez Gene 189763 Entrez gene
WormBase CE38886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496928 Serpentine Receptor, class E (epsilon) family member (sre-47) [Caenorhabditis elegans] 0.0
blast CAB60340 Hypothetical protein Y39G8B.4 [Caenorhabditis elegans] 0.0
blast CAB60337 Hypothetical protein Y39G8B.3 [Caenorhabditis elegans] ref|NP_496927.1| Serpentine Receptor, class E (epsilon) family member (sre-48) [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496928.2 8 5-27,42-64,73-95,138-160,181-203,207-229,271-293,303-325
Y39G8B.4 8 5-27,42-64,73-95,138-160,181-203,207-229,271-293,303-325
Sequence
Target Sequence 
>C. ELEGANS:180428_AT
gctgtgatgctaatgctctactcccgccactacaaccaaaaaatcacgaaaatccacgaa
gactacgcccatcaatccaactacacccttgcagcgagatttcaggccaaagagaacatg
aagtgttttgaaatgatctggaaaatcgtaatattcgcactttgtatcggaattgtcggt
tttgctacagctctatccttatatttccatattctaccagaattggacaccatgcttaac
cttgtcatgcaggctatgataaacctgccgccgttggtagtgtgtcctgctatcatctat
tccgtggagtctttcaggagctatcactttttgtcggttacttatttttgggagaagctg
aaagtcgggcacggggctgtggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGATGCTAATGCTCTACTCCC 561 295 718 Antisense
AAAATCCACGAAGACTACGCCCATC 646 131 766 Antisense
AACTACACCCTTGCAGCGAGATTTC 669 139 796 Antisense
GAATTGTCGGTTTTGCTACAGCTCT 680 323 887 Antisense
TACAGCTCTATCCTTATATTTCCAT 538 643 903 Antisense
GACACCATGCTTAACCTTGTCATGC 164 369 943 Antisense
AGGCTATGATAAACCTGCCGCCGTT 243 53 968 Antisense
GTTGGTAGTGTGTCCTGCTATCATC 696 435 990 Antisense
TGCTATCATCTATTCCGTGGAGTCT 258 579 1005 Antisense
TTCAGGAGCTATCACTTTTTGTCGG 267 687 1030 Antisense
AAGTCGGGCACGGGGCTGTGGATAT 521 149 1079 Antisense
Sequence Source Affymetrix Proprietary Database