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[180427_at]

Description ZC395.5 /REP_DB=WormBase Gene ID /WP=CE01441 /TR=Q9GYG2 /GB=AAG00037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 85      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 96      6grp_total > 74      4grp_total > 13      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4363
1 2 3 4 range
A 1863.4
(-0.7)
P 		495.7
(-2.9)
P 		444.5
(-3)
P 		4212.8
(3)
P 		3768
B 2099.9
(0.4)
P 		807.4
(-2.2)
P 		393.9
(-3)
P 		3361.7
(3)
P 		2968
C 1999.3
(-0.8)
P 		653.4
(-2.7)
P 		459
(-3)
P 		4757.1
(3)
P 		4298
avr 1987.5
(-0.5) 		652.2
(-2.6) 		432.5
(-3) 		4110.5
(3) 		3678

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1069
1 2 3 4 5 6 range
A 322.7
(-3)
P 		518.6
(-1.4)
P 		1070.9
(3)
P 		788.1
(0.7)
P 		759.3
(0.5)
P 		784.3
(0.7)
P 		748
B 297.4
(-3)
P 		834.2
(0.5)
P 		1060
(2)
P 		784.5
(0.2)
P 		1219.5
(3)
P 		1159
(2.6)
P 		922
C 383.2
(-3)
P 		679
(-1.2)
P 		408.1
(-2.8)
P 		870.4
(-0)
P 		927.5
(0.3)
P 		1366
(3)
P 		983
avr 334.4
(-3) 		677.3
(-0.3) 		846.3
(1) 		814.3
(0.7) 		968.8
(2) 		1103.1
(3) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 711
1 2 3 4 range
A 678.5
(3)
P 		107.6
(-3)
P 		116.2
(-2.9)
P 		616.7
(2.4)
P 		571
B 669.7
(2.6)
P 		199.4
(-2)
P 		91.3
(-3)
P 		716.4
(3)
P 		625
C 661.8
(1.7)
P 		187.8
(-2.7)
P 		160
(-3)
P 		802.1
(3)
P 		642
avr 670
(2.6) 		164.9
(-2.6) 		122.5
(-3) 		711.7
(3) 		589

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 59.5
(-3)
P 		184.4
(1.3)
P 		233.2
(3)
P 		199.9
(1.8)
P 		229.1
(2.9)
P 		191
(1.5)
P 		174
B 103.5
(-3)
P 		277.7
(-0.3)
P 		257.4
(-0.6)
P 		207.8
(-1.4)
P 		495.5
(3)
P 		432.2
(2)
P 		392
C 142
(-2.4)
P 		207.2
(-1.2)
P 		103.9
(-3)
P 		175
(-1.8)
P 		300.1
(0.3)
P 		457.3
(3)
P 		353
avr 101.7
(-3) 		223.1
(-0.2) 		198.2
(-0.8) 		194.2
(-0.9) 		341.6
(2.6) 		360.2
(3) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7011
Sequence Type Exemplar sequence
Representative Public ID ZC395.5 NCBI
Target Description ZC395.5 /REP_DB=WormBase Gene ID /WP=CE01441 /TR=Q9GYG2 /GB=AAG00037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065722 NCBI Caenorhabditis elegans ZC395.5 (ZC395.5) mRNA, complete cds. 11/11 None
SNAP00000016748 ENSEMBL cdna:SNAP chromosome:CEL140:III:5267828:5269906:1 11/11 None
GENEFINDER00000016761 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5267828:5268452:1 11/11 None
ZC395.5 ENSEMBL cdna:known chromosome:CEL140:III:5267796:5268498:1 gene:ZC395.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5267826-5268451(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC395.5
Entrez Gene 191152 Entrez gene
SwissProt Q9GYG2 EMBL-EBI
WormBase CE01441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00037 Hypothetical protein ZC395.5 [Caenorhabditis elegans] ref|NP_498123.1| ZC395.5 [Caenorhabditis elegans] 1.0E-36
blast AAG00037 Hypothetical protein ZC395.5 [Caenorhabditis elegans] ref|NP_498123.1| ZC395.5 [Caenorhabditis elegans] 3.0E-36
blast CAE73677 Hypothetical protein CBG21186 [Caenorhabditis briggsae] 2.0E-13
blast CAE73677 Hypothetical protein CBG21186 [Caenorhabditis briggsae] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180427_AT
tttgaagaagattggtggtgacgatgaaagggagcgacgtttcagtgatgcatctgatac
atcaatggattgtcacatggaatctatcggaagtcgtcgccgtgacagtttaatcgaaca
attccgcgattttttgaaccgatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAAGAAGATTGGTGGTGACGAT 345 613 42 Antisense
GGTGGTGACGATGAAAGGGAGCGAC 243 499 55 Antisense
AGGGAGCGACGTTTCAGTGATGCAT 212 57 70 Antisense
GACGTTTCAGTGATGCATCTGATAC 141 379 77 Antisense
GCATCTGATACATCAATGGATTGTC 708 309 91 Antisense
GGATTGTCACATGGAATCTATCGGA 293 509 108 Antisense
ATCTATCGGAAGTCGTCGCCGTGAC 665 31 123 Antisense
GTCGTCGCCGTGACAGTTTAATCGA 244 473 134 Antisense
GACAGTTTAATCGAACAATTCCGCG 396 367 145 Antisense
CAATTCCGCGATTTTTTGAACCGAT 36 179 160 Antisense
TTCCGCGATTTTTTGAACCGATCAA 584 697 163 Antisense
Sequence Source Affymetrix Proprietary Database