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[180426_at]

Description W04C9.4 /REP_DB=WormBase Gene ID /WP=CE18335 /TR=Q9TZE4 /GB=AAC68727.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 95      6grp_total > 79      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 956.3
(2.8)
P 		826.4
(-3)
P 		930.6
(1.7)
P 		960.8
(3)
P 		134
B 927.6
(-1.9)
P 		916.4
(-2.3)
P 		1071.7
(3)
P 		894.5
(-3)
P 		177
C 914.1
(3)
P 		903.4
(2.6)
P 		753.7
(-3)
P 		898.2
(2.4)
P 		160
avr 932.7
(3) 		882.1
(-3) 		918.7
(1.3) 		917.8
(1.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 532.9
(-2.1)
P 		470.7
(-3)
P 		734.5
(0.8)
P 		578.8
(-1.4)
P 		643
(-0.5)
P 		886.7
(3)
P 		416
B 696.4
(-0.8)
P 		797.5
(0.4)
P 		664.8
(-1.2)
P 		521.1
(-3)
P 		820
(0.7)
P 		1004.9
(3)
P 		484
C 516.6
(-1.9)
P 		907.2
(2.5)
P 		419.8
(-3)
P 		641.8
(-0.5)
P 		439.9
(-2.8)
P 		954.7
(3)
P 		535
avr 582
(-3) 		725.1
(-0.6) 		606.4
(-2.6) 		580.6
(-3) 		634.3
(-2.1) 		948.8
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 348.2
(3)
P 		179.4
(-1.9)
P 		243.3
(-0)
P 		140.6
(-3)
P 		208
B 295.8
(3)
P 		226.3
(-1)
P 		248.3
(0.3)
P 		190.6
(-3)
P 		105
C 302.6
(3)
P 		259.7
(1.3)
P 		262.7
(1.4)
P 		151.4
(-3)
P 		151
avr 315.5
(3) 		221.8
(-0.6) 		251.4
(0.5) 		160.9
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 98.2
(-3)
P 		167.4
(0.5)
P 		160
(0.2)
P 		146.8
(-0.5)
P 		194
(1.9)
P 		215.9
(3)
P 		118
B 242.3
(-0.4)
P 		265.5
(0.2)
P 		161.4
(-2.4)
P 		138
(-3)
P 		333.2
(1.9)
P 		374.7
(3)
P 		237
C 191.5
(-0.6)
P 		276.8
(1.8)
P 		106.8
(-3)
P 		129.1
(-2.4)
P 		142.3
(-2)
P 		319.6
(3)
P 		213
avr 177.3
(-1.6) 		236.6
(0.6) 		142.7
(-2.8) 		138
(-3) 		223.2
(0.1) 		303.4
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2575
Sequence Type Exemplar sequence
Representative Public ID W04C9.4 NCBI
Target Description W04C9.4 /REP_DB=WormBase Gene ID /WP=CE18335 /TR=Q9TZE4 /GB=AAC68727.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058333 NCBI Caenorhabditis elegans W04C9.4 (W04C9.4) mRNA, complete cds. 11/11 None
SNAP00000019984 ENSEMBL cdna:SNAP chromosome:CEL140:I:461998:462563:1 11/11 None
GENEFINDER00000019995 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:462003:462563:1 11/11 None
W04C9.4 ENSEMBL cdna:known chromosome:CEL140:I:461996:462655:1 gene:W04C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:462002-462563(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04C9.4
Entrez Gene 171636 Entrez gene
SwissProt Q9TZE4 EMBL-EBI
WormBase CE18335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68727 Hypothetical protein W04C9.4 [Caenorhabditis elegans] ref|NP_490734.1| W04C9.4 [Caenorhabditis elegans] 1.0E-44
blast CAE74342 Hypothetical protein CBG22060 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:180426_AT
aaagcgcaacgcatgaaggcagacgctaaaaatgccaaaaaagacggtgaagtggatgtt
gagatgaaggaggaggtggtgagagtcagaggactcgccgtatcgtcgctgaaaaaattg
gcctccggtgagctgcaaaacgtgccaaaagtgaacgagaagaagattatccgcaagaca
gagcttccagttcgagagaacaaaaagatcctggacgctccgactggaaaacgtggcacc
actgctcaatacatcacaaaaaagaaggcaaagaagatgtacaagaagatgacacacgac
gcacgcgacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGCAACGCATGAAGGCAGACG 286 123 76 Antisense
GAGAGTCAGAGGACTCGCCGTATCG 650 395 156 Antisense
TCGCCGTATCGTCGCTGAAAAAATT 481 593 170 Antisense
AAAAATTGGCCTCCGGTGAGCTGCA 256 129 188 Antisense
CCTCCGGTGAGCTGCAAAACGTGCC 22 267 197 Antisense
GATTATCCGCAAGACAGAGCTTCCA 103 431 240 Antisense
GACAGAGCTTCCAGTTCGAGAGAAC 182 369 252 Antisense
ACAAAAAGATCCTGGACGCTCCGAC 153 111 275 Antisense
GGACGCTCCGACTGGAAAACGTGGC 652 521 288 Antisense
TGGCACCACTGCTCAATACATCACA 578 545 309 Antisense
ATGACACACGACGCACGCGACAAAT 140 45 364 Antisense
Sequence Source Affymetrix Proprietary Database