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[180425_s_at]

Description F15E6.3 /REP_DB=WormBase Gene ID /WP=CE16992 /TR=Q27285 /GB=AAB92055.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 67      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 151.4
(-2.4)
P 		102.7
(-3)
A 		120.7
(-2.8)
P 		605.3
(3)
P 		503
B 171.9
(-1.5)
P 		73.9
(-3)
P 		113.8
(-2.4)
P 		462.6
(3)
P 		389
C 125.8
(-2.6)
P 		93.9
(-3)
P 		125.9
(-2.6)
P 		557.9
(3)
P 		464
avr 149.7
(-2.2) 		90.2
(-3) 		120.1
(-2.6) 		541.9
(3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1001
1 2 3 4 5 6 range
A 282.3
(-2.3)
P 		174.4
(-3)
P 		186.8
(-2.9)
P 		271
(-2.4)
P 		176.7
(-3)
P 		1067.8
(3)
P 		893
B 248.6
(-2.3)
P 		185.1
(-2.7)
P 		143.9
(-3)
P 		191.1
(-2.7)
P 		265.8
(-2.2)
P 		1047.3
(3)
P 		903
C 306
(-2.2)
P 		175.3
(-3)
P 		172.7
(-3)
P 		226.4
(-2.7)
P 		239.1
(-2.6)
P 		1144.5
(3)
P 		972
avr 279
(-2.3) 		178.3
(-2.9) 		167.8
(-3) 		229.5
(-2.6) 		227.2
(-2.6) 		1086.5
(3) 		919
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 55.1
(-0)
P 		22.3
(-3)
A 		31.6
(-2.2)
P 		88.6
(3)
P 		66
B 54.8
(-0.3)
P 		18.3
(-3)
P 		26.4
(-2.4)
P 		98.6
(3)
P 		80
C 41.7
(-1.7)
P 		27
(-3)
P 		43.9
(-1.5)
P 		94.1
(3)
P 		67
avr 50.5
(-0.6) 		22.5
(-3) 		34
(-2) 		93.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 52
(-2.7)
P 		62
(-2.4)
P 		40.7
(-3)
P 		68.7
(-2.2)
P 		53.3
(-2.7)
P 		260
(3)
P 		219
B 86.5
(-2.1)
P 		61.6
(-2.6)
P 		35
(-3)
P 		50.6
(-2.7)
P 		108
(-1.8)
P 		390.5
(3)
P 		356
C 113.4
(-1.8)
P 		53.5
(-2.8)
P 		43.9
(-3)
P 		45.5
(-3)
P 		77.4
(-2.4)
P 		383.1
(3)
P 		339
avr 84
(-2.1) 		59
(-2.6) 		39.9
(-3) 		54.9
(-2.7) 		79.6
(-2.2) 		344.5
(3) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180425_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10875
Sequence Type Exemplar sequence
Representative Public ID F15E6.3 NCBI
Target Description F15E6.3 /REP_DB=WormBase Gene ID /WP=CE16992 /TR=Q27285 /GB=AAB92055.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068136 NCBI Caenorhabditis elegans F15E6.3 (F15E6.3) mRNA, complete cds. 11/11 A 
SNAP00000035367 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4294928:4295584:1 11/11 None
GENEFINDER00000035380 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4294970:4295584:1 11/11 None
F15E6.3 ENSEMBL cdna:known chromosome:CEL140:IV:4294895:4295678:1 gene:F15E6.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4294933-4295590(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.3
Entrez Gene 177195 Entrez gene
SwissProt Q27285 EMBL-EBI
WormBase CE16992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500537 F15E6.3 [Caenorhabditis elegans] gb|AAB92055.1| Hypothetical protein F15E6.3 [Caenorhabditis elegans] gb|AAA85197.1| RNA binding protein gb|AAA77029.1| RRM-type RNA binding protein 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180425_S_AT
ggagttggaccggcgagagctaatgctaacctaaacggaggttttcaacgtggctacggc
ggcaatggctacggtaaccgaggtggatacggtcagcagggcggctattatggccagcaa
ggaggttacggtcaacagggtggatatggtggcaatcagggctactatgggcaacaagga
ggcggttatggaggtggccgcggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTGGACCGGCGAGAGCTAATG 355 515 97 Antisense
AGAGCTAATGCTAACCTAAACGGAG 417 69 112 Antisense
GGAGGTTTTCAACGTGGCTACGGCG 109 515 133 Antisense
TACGGCGGCAATGGCTACGGTAACC 353 643 151 Antisense
GATACGGTCAGCAGGGCGGCTATTA 477 417 182 Antisense
GCAGGGCGGCTATTATGGCCAGCAA 537 309 192 Antisense
GGCCAGCAAGGAGGTTACGGTCAAC 264 543 208 Antisense
GGTCAACAGGGTGGATATGGTGGCA 469 499 226 Antisense
ATGGTGGCAATCAGGGCTACTATGG 139 43 242 Antisense
GGGCTACTATGGGCAACAAGGAGGC 41 493 255 Antisense
GCGGTTATGGAGGTGGCCGCGGTGC 97 291 278 Antisense
Sequence Source Affymetrix Proprietary Database