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[180424_at]

Description F15E6.3 /REP_DB=WormBase Gene ID /WP=CE16992 /TR=Q27285 /GB=AAB92055.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 51.7
(-1.5)
A 		3.7
(-3)
A 		59.6
(-1.3)
A 		198.5
(3)
P 		195
B 74.9
(-1)
A 		8.9
(-2.9)
A 		7.1
(-3)
A 		210.4
(3)
P 		203
C 38.6
(-2)
A 		8.3
(-3)
A 		17.6
(-2.7)
A 		194.9
(3)
P 		187
avr 55.1
(-1.5) 		7
(-3) 		28.1
(-2.3) 		201.3
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 119.5
(-2.5)
A 		78.5
(-3)
A 		87.7
(-2.9)
A 		152.8
(-2)
P 		89.4
(-2.9)
A 		530.1
(3)
P 		452
B 154.8
(-2.1)
P 		66.3
(-3)
A 		94.1
(-2.7)
A 		96.7
(-2.7)
A 		158.5
(-2)
P 		627.2
(3)
P 		561
C 187.6
(-2)
P 		79.1
(-3)
A 		96.3
(-2.8)
A 		80.2
(-3)
A 		135
(-2.5)
P 		744.9
(3)
P 		666
avr 154
(-2.1) 		74.6
(-3) 		92.7
(-2.8) 		109.9
(-2.6) 		127.6
(-2.4) 		634.1
(3) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 18.8
(0.8)
A 		0.8
(-3)
A 		15.6
(0.1)
A 		29.1
(3)
P 		28
B 23.9
(0.1)
A 		2.2
(-2.9)
A 		1.6
(-3)
A 		44.8
(3)
P 		43
C 12.8
(-1)
A 		2.4
(-3)
A 		6.1
(-2.3)
A 		32.9
(3)
P 		31
avr 18.5
(-0) 		1.8
(-3) 		7.8
(-1.9) 		35.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 22
(-2.8)
A 		27.9
(-2.5)
A 		19.1
(-3)
A 		38.8
(-1.9)
P 		27
(-2.6)
A 		129.1
(3)
P 		110
B 53.9
(-2.1)
P 		22.1
(-3)
A 		22.8
(-3)
A 		25.6
(-2.9)
A 		64.4
(-1.8)
P 		233.9
(3)
P 		212
C 69.5
(-1.6)
P 		24.1
(-2.8)
A 		24.5
(-2.8)
A 		16.1
(-3)
A 		43.7
(-2.3)
P 		249.4
(3)
P 		233
avr 48.5
(-2.1) 		24.7
(-2.9) 		22.1
(-3) 		26.8
(-2.8) 		45
(-2.2) 		204.1
(3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10875
Sequence Type Exemplar sequence
Representative Public ID F15E6.3 NCBI
Target Description F15E6.3 /REP_DB=WormBase Gene ID /WP=CE16992 /TR=Q27285 /GB=AAB92055.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068136 NCBI Caenorhabditis elegans F15E6.3 (F15E6.3) mRNA, complete cds. 11/11 A 
SNAP00000035367 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4294928:4295584:1 11/11 None
F15E6.3 ENSEMBL cdna:known chromosome:CEL140:IV:4294895:4295678:1 gene:F15E6.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035380 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4294933-4295590(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.3
Entrez Gene 177195 Entrez gene
SwissProt Q27285 EMBL-EBI
WormBase CE16992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500537 F15E6.3 [Caenorhabditis elegans] gb|AAB92055.1| Hypothetical protein F15E6.3 [Caenorhabditis elegans] gb|AAA85197.1| RNA binding protein gb|AAA77029.1| RRM-type RNA binding protein 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180424_AT
tgtgttctgcttggccttattgcaatgacggcagcccaattcggactaaactcgggactt
gggcttggagttggaccggcgagagctaatgctaacctaaacggaggttttcaacgtggc
tacggcggcaatggctacggtaaccgaggtggatacggtcagcagggcggctattatggc
cagcaaggaggttacggtcaacagggtggatatggtggcaatcagggctactatgggcaa
caaggaggcggttatggaggtggccgcggtgcctatggaaatgttggacttggggtaaat
ccaggagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTTCTGCTTGGCCTTATTGCAA 659 555 31 Antisense
TCTGCTTGGCCTTATTGCAATGACG 699 607 36 Antisense
GGCCTTATTGCAATGACGGCAGCCC 580 543 43 Antisense
GCAATGACGGCAGCCCAATTCGGAC 324 321 52 Antisense
CGGCAGCCCAATTCGGACTAAACTC 699 241 59 Antisense
GCAGCCCAATTCGGACTAAACTCGG 487 311 61 Antisense
TCGGACTAAACTCGGGACTTGGGCT 445 207 71 Antisense
CTAAACTCGGGACTTGGGCTTGGAG 644 223 76 Antisense
TCGGGACTTGGGCTTGGAGTTGGAC 653 237 82 Antisense
CCTATGGAAATGTTGGACTTGGGGT 439 261 302 Antisense
TGGACTTGGGGTAAATCCAGGAGTC 391 521 315 Antisense
Sequence Source Affymetrix Proprietary Database