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[180422_s_at]

Description B0218.7 /REP_DB=WormBase Gene ID /WP=CE06690 /TR=Q17451 /GB=AAB00669.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 91.5
(-0.6)
A 		68.6
(-3)
A 		125.8
(3)
A 		122.8
(2.7)
A 		57
B 103.3
(2.9)
A 		103.9
(3)
A 		87.5
(0.9)
A 		56.2
(-3)
A 		48
C 70.7
(0.4)
A 		93.1
(3)
A 		41.9
(-3)
A 		85.9
(2.2)
P 		51
avr 88.5
(3) 		88.5
(3) 		85.1
(-3) 		88.3
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 63.2
(-2.4)
A 		49.9
(-3)
A 		68.4
(-2.1)
A 		79
(-1.6)
A 		139.3
(1.2)
P 		176.8
(3)
P 		127
B 70.7
(-2.6)
A 		63.1
(-3)
A 		78.1
(-2.3)
A 		91
(-1.6)
A 		135.5
(0.6)
P 		183.8
(3)
P 		121
C 92.2
(-0.1)
A 		92.9
(-0.1)
A 		21.8
(-3)
A 		57.6
(-1.5)
A 		130.3
(1.4)
P 		169.2
(3)
P 		147
avr 75.4
(-2) 		68.6
(-2.4) 		56.1
(-3) 		75.9
(-2) 		135
(0.9) 		176.6
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 33.3
(3)
A 		14.9
(-3)
A 		32.9
(2.9)
A 		18
(-2)
A 		18
B 32.9
(3)
A 		25.7
(0.9)
A 		20.3
(-0.6)
A 		12
(-3)
A 		21
C 23.4
(1.3)
A 		26.8
(3)
A 		14.6
(-3)
A 		14.5
(-3)
P 		12
avr 29.9
(3) 		22.5
(0.1) 		22.6
(0.1) 		14.8
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 11.7
(-3)
A 		17.8
(-1.8)
A 		14.9
(-2.4)
A 		20
(-1.4)
A 		42
(2.8)
P 		43
(3)
P 		31
B 24.6
(-2.3)
A 		21
(-2.8)
A 		19
(-3)
A 		24.1
(-2.4)
A 		55.1
(1.4)
P 		68.5
(3)
P 		50
C 34.2
(0.4)
A 		28.3
(-0.3)
A 		5.5
(-3)
A 		11.6
(-2.3)
A 		42.2
(1.3)
P 		56.7
(3)
P 		51
avr 23.5
(-1.5) 		22.4
(-1.7) 		13.1
(-3) 		18.6
(-2.2) 		46.4
(1.6) 		56.1
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180422_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9970
Sequence Type Exemplar sequence
Representative Public ID B0218.7 NCBI
Target Description B0218.7 /REP_DB=WormBase Gene ID /WP=CE06690 /TR=Q17451 /GB=AAB00669.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068969 NCBI Caenorhabditis elegans B0218.7 (B0218.7) mRNA, complete cds. 11/11 None
SNAP00000005557 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8164643:8165876:-1 11/11 None
GENEFINDER00000005565 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8164367:8165876:-1 11/11 None
B0218.7 ENSEMBL cdna:known chromosome:CEL140:IV:8164608:8166059:-1 gene:B0218.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8164648-8166065(-) 94.57 100.0
Public Domain and Genome References
Gene Title
Ensembl B0218.7
Entrez Gene 177614 Entrez gene
SwissProt Q17451 EMBL-EBI
WormBase CE06690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00669 Hypothetical protein B0218.7 [Caenorhabditis elegans] ref|NP_501370.1| B0218.7 [Caenorhabditis elegans] 0.0
blast AAB00669 Hypothetical protein B0218.7 [Caenorhabditis elegans] ref|NP_501370.1| B0218.7 [Caenorhabditis elegans] 1.0E-148
blast AAB00669 Hypothetical protein B0218.7 [Caenorhabditis elegans] ref|NP_501370.1| B0218.7 [Caenorhabditis elegans] 1.0E-147
blast CAE69566 Hypothetical protein CBG15778 [Caenorhabditis briggsae] 7.0E-87
blast CAE69566 Hypothetical protein CBG15778 [Caenorhabditis briggsae] 5.0E-76
blast CAE69566 Hypothetical protein CBG15778 [Caenorhabditis briggsae] 8.0E-75
Sequence
Target Sequence 
>C. ELEGANS:180422_S_AT
gttgacactcgttcggctggaaatccatattcccatcatccaaacttcaccactccatct
caatactttgaacatattatggattctgaaggagaacaacacaagatggagaataaaaac
gaagaaaatttgctgactattatggatatcaagaacttgaaggatccatttggaaattat
gatatggatggagaacaggcaccaatggttagcatcaatccaccaaatgatgtgactgtt
aacaagaacgccttctcttctgactcaattgctgatattcagaacatgaacatctcattt
ccgatcaaagctttcactgctccagctatcccatccacgtctcctgacggaacacttaat
aagaaaatgttgagccccgaatcaatgtacgagttggagcagactgatggagaattcgag
ctcaaggagatgcttacaaactcacttgtcctccgtgactactcgcccgaatctctcgca
gaacttcgcaacatgcgcaacttgtctcaatacactgatttcaactcgggatcctcgaaa
gatgtggccactggaatcggaatttccccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGACACTCGTTCGGCTGGAAATC 196 439 415 Antisense
GGAAATCCATATTCCCATCATCCAA 384 527 433 Antisense
TCACCACTCCATCTCAATACTTTGA 663 625 461 Antisense
TAACAAGAACGCCTTCTCTTCTGAC 603 639 654 Antisense
TCCGATCAAAGCTTTCACTGCTCCA 620 595 714 Antisense
ATCCACGTCTCCTGACGGAACACTT 356 33 747 Antisense
ATGCTTACAAACTCACTTGTCCTCC 28 43 844 Antisense
AATCTCTCGCAGAACTTCGCAACAT 566 169 884 Antisense
TTCGCAACATGCGCAACTTGTCTCA 348 697 899 Antisense
ACACTGATTTCAACTCGGGATCCTC 676 109 926 Antisense
GCCACTGGAATCGGAATTTCCCCGT 16 275 961 Antisense
Sequence Source Affymetrix Proprietary Database