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[180421_at]

Description Y51A2A.4 /REP_DB=WormBase Gene ID /WP=CE25360 /TR=Q9U269 /GB=CAB63378.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 10.8
(-3)
A 		30.3
(-2.5)
A 		14.6
(-2.9)
A 		245.6
(3)
P 		235
B 2.7
(-3)
A 		20
(-2.4)
A 		19.9
(-2.4)
A 		186.8
(3)
P 		184
C 18.6
(-2.8)
A 		10.3
(-3)
A 		20.7
(-2.8)
A 		341.9
(3)
P 		332
avr 10.7
(-3) 		20.2
(-2.8) 		18.4
(-2.8) 		258.1
(3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 5.3
(-3)
A 		7.5
(-2.9)
A 		31.9
(-2.3)
A 		41.7
(-2)
A 		63.8
(-1.4)
P 		227.7
(3)
P 		222
B 12.8
(-2.7)
A 		15.3
(-2.6)
A 		2.8
(-3)
A 		39.2
(-1.9)
A 		87.8
(-0.4)
P 		197
(3)
P 		194
C 2.8
(-3)
A 		4.8
(-2.9)
A 		20.1
(-2.5)
A 		18.6
(-2.5)
A 		102.9
(-0.1)
P 		208.3
(3)
P 		206
avr 7
(-3) 		9.2
(-2.9) 		18.3
(-2.7) 		33.2
(-2.2) 		84.8
(-0.7) 		211
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 3.9
(-3)
A 		6.6
(-2.5)
A 		3.8
(-3)
A 		35.9
(3)
P 		32
B 0.9
(-3)
A 		4.9
(-2.4)
A 		4.6
(-2.4)
A 		39.8
(3)
P 		39
C 6.2
(-2.6)
A 		3
(-3)
A 		7.2
(-2.5)
A 		57.6
(3)
P 		55
avr 3.7
(-3) 		4.8
(-2.8) 		5.2
(-2.8) 		44.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 1
(-3)
A 		2.7
(-2.8)
A 		7
(-2.3)
A 		10.6
(-1.9)
A 		19.3
(-1)
P 		55.4
(3)
P 		54
B 4.4
(-2.7)
A 		5.1
(-2.6)
A 		0.7
(-3)
A 		10.4
(-2.2)
A 		35.7
(-0.1)
P 		73.5
(3)
P 		73
C 1
(-3)
A 		1.5
(-3)
A 		5.1
(-2.6)
A 		3.7
(-2.8)
A 		33.3
(-0.2)
P 		69.7
(3)
P 		69
avr 2.1
(-3) 		3.1
(-2.9) 		4.3
(-2.8) 		8.2
(-2.4) 		29.4
(-0.4) 		66.2
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13669
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.4 NCBI
Target Description Y51A2A.4 /REP_DB=WormBase Gene ID /WP=CE25360 /TR=Q9U269 /GB=CAB63378.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075179 NCBI Caenorhabditis elegans Y51A2A.4 (Y51A2A.4) mRNA, complete cds. 11/11 None
SNAP00000039468 ENSEMBL cdna:SNAP chromosome:CEL140:V:18293508:18293922:1 11/11 None
GENEFINDER00000039481 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18293508:18293922:1 11/11 None
Y51A2A.4 ENSEMBL cdna:known chromosome:CEL140:V:18293508:18293922:1 gene:Y51A2A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039469 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039480 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18293507-18293922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.4
Entrez Gene 190120 Entrez gene
SwissProt Q9U269 EMBL-EBI
WormBase CE25360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63378 Hypothetical protein Y51A2A.4 [Caenorhabditis elegans] ref|NP_507580.1| Y51A2A.4 [Caenorhabditis elegans] 1.0E-45
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 2.0E-20
blast CAE18002 Hypothetical protein Y51A2A.11 [Caenorhabditis elegans] ref|NP_001024256.1| Y51A2A.11 [Caenorhabditis elegans] 5.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507580.1 1 4-26
Y51A2A.4 1 4-26
SNAP00000039468 1 4-26
GENEFINDER00000039481 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:180421_AT
atgggcacatcattcaacatgaatttcatcgtctgccttctcgcactcatcgcctgtgtt
gcaaactttgggttctgccagaatattcatgatgcggcctcaaatattattggacacgca
acaggagctattggagatgccgatgtagctgcttctgcaaacttgagactctcccatggt
catgatgactcagatgactcagatgttgattttgagcatgatcatgatcataatgatgca
gataatcgacacatttatcaaggaacaattctaaacggttttggtgaagttatacacgac
ggtgttcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCACATCATTCAACATGAATT 76 51 13 Antisense
GTTGCAAACTTTGGGTTCTGCCAGA 377 439 70 Antisense
GAATATTCATGATGCGGCCTCAAAT 528 323 93 Antisense
GGACACGCAACAGGAGCTATTGGAG 56 527 124 Antisense
TGGAGATGCCGATGTAGCTGCTTCT 500 549 144 Antisense
TGCCGATGTAGCTGCTTCTGCAAAC 532 585 150 Antisense
GCTTCTGCAAACTTGAGACTCTCCC 31 307 163 Antisense
GACTCTCCCATGGTCATGATGACTC 652 373 179 Antisense
GACTCAGATGACTCAGATGTTGATT 464 373 199 Antisense
ATGATGCAGATAATCGACACATTTA 21 47 245 Antisense
GAAGTTATACACGACGGTGTTCTTG 429 335 298 Antisense
Sequence Source Affymetrix Proprietary Database