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[180420_at]

Description Y48A6B.1 /REP_DB=WormBase Gene ID /WP=CE19184 /TR=Q9XXD5 /GB=CAA19526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 111.8
(3)
A 		77.8
(-3)
A 		97.4
(0.5)
A 		104.1
(1.6)
A 		34
B 123.8
(3)
A 		35.7
(-3)
A 		111.8
(2.2)
A 		79.9
(0)
A 		88
C 144.9
(3)
A 		128.6
(1.8)
A 		66
(-3)
A 		127.9
(1.7)
A 		79
avr 126.8
(3) 		80.7
(-3) 		91.7
(-1.6) 		104
(0) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 172.9
(3)
A 		161.8
(2.5)
A 		96.5
(-0.1)
A 		103.5
(0.2)
A 		105.7
(0.2)
A 		26.4
(-3)
A 		147
B 125.1
(0.3)
A 		197.1
(3)
P 		99.2
(-0.7)
A 		89.3
(-1.1)
A 		71.7
(-1.8)
A 		39.4
(-3)
A 		158
C 146.7
(2.3)
A 		159.7
(3)
M 		96.1
(-0.5)
A 		122.5
(1)
A 		77
(-1.5)
A 		49.8
(-3)
A 		110
avr 148.2
(1.9) 		172.9
(3) 		97.3
(-0.4) 		105.1
(-0) 		84.8
(-0.9) 		38.5
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 40.7
(3)
A 		16.9
(-2.6)
A 		25.5
(-0.6)
A 		15.2
(-3)
A 		26
B 39.5
(3)
A 		8.8
(-3)
A 		25.9
(0.3)
A 		17
(-1.4)
A 		31
C 48
(3)
A 		37
(0.5)
A 		23
(-2.7)
A 		21.6
(-3)
A 		26
avr 42.7
(3) 		20.9
(-2.3) 		24.8
(-1.3) 		17.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 31.9
(-0)
A 		57.5
(3)
A 		21
(-1.3)
A 		26.3
(-0.7)
A 		31.9
(-0)
A 		6.4
(-3)
A 		51
B 43.5
(0.4)
A 		65.6
(3)
P 		24.1
(-1.9)
A 		23.6
(-2)
A 		29.1
(-1.3)
A 		14.7
(-3)
A 		51
C 54.4
(3)
A 		48.7
(2.1)
M 		24.5
(-1.8)
A 		24.6
(-1.7)
A 		24.9
(-1.7)
A 		16.7
(-3)
A 		38
avr 43.3
(1.1) 		57.3
(3) 		23.2
(-1.6) 		24.8
(-1.4) 		28.6
(-0.9) 		12.6
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7021
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.1 NCBI
Target Description Y48A6B.1 /REP_DB=WormBase Gene ID /WP=CE19184 /TR=Q9XXD5 /GB=CAA19526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067012 NCBI Caenorhabditis elegans Y48A6B.1 (Y48A6B.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033023 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10992006:10994266:-1 11/11 None
SNAP00000033003 ENSEMBL cdna:SNAP chromosome:CEL140:III:10992015:10994053:-1 11/11 None
Y48A6B.1 ENSEMBL cdna:known chromosome:CEL140:III:10992006:10995114:-1 gene:Y48A6B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182212 1/11 Cross Hyb Matching Probes None
F13D12.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10992001-10995110(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.1
Entrez Gene 190009 Entrez gene
SwissProt Q9XXD5 EMBL-EBI
WormBase CE19184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19526 Hypothetical protein Y48A6B.1 [Caenorhabditis elegans] ref|NP_499413.1| Y48A6B.1 [Caenorhabditis elegans] 0.0
blast CAE69271 Hypothetical protein CBG15324 [Caenorhabditis briggsae] 0.0
blast CAE69271 Hypothetical protein CBG15324 [Caenorhabditis briggsae] 1.0E-163
blast CAA19526 Hypothetical protein Y48A6B.1 [Caenorhabditis elegans] ref|NP_499413.1| Y48A6B.1 [Caenorhabditis elegans] 1.0E-142
blast CAE69271 Hypothetical protein CBG15324 [Caenorhabditis briggsae] 1.0E-122
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499413.1 7 32-54,67-89,109-131,152-174,222-244,304-326,341-363
Y48A6B.1 7 32-54,67-89,109-131,152-174,222-244,304-326,341-363
GENEFINDER00000033023 6 7-29,49-71,92-114,162-184,244-266,281-303
SNAP00000033003 4 21-43,91-113,173-195,210-232
Sequence
Target Sequence 
>C. ELEGANS:180420_AT
gagggtgcaaagttcgacggcctctacacagttcaactggacgagaccaagatcaacgga
tgtgcactttttcgtgtaaatttatggattaccgggatcatgttcaaggctcttccttgc
cttctgatcctctggttcaccattgccttaatctataaactggttcaaatgagcgagaag
cggaagattctacgtggtgaaaagcgggaaaacgtggaatttcagctgcttgccacgtca
gcaacacccacgacgactacaagaaatgaagcttcaccacgattgcgaaaagtgtcccaa
tgcagcagaaatgtctcaattgaccgaacgacattgatgctcatcataatgcttgtggta
ttcctgtgcaccgaaatgccgcaaggcctactttccattttatcggcaatctacccgaca
catgtgcatacaatgatctatgtgaatgttggagaggttctcgatttaatgtcactaatc
aattgtctgacgtctttcattgtatattgcgtgatgagtaccacgtacagagctacggta
aagtctgttctgtgccgatcgacttcgcgacggactgtcttcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGTGCAAAGTTCGACGGCCTCT 343 401 589 Antisense
TACCGGGATCATGTTCAAGGCTCTT 460 649 678 Antisense
TGGTTCACCATTGCCTTAATCTATA 209 551 721 Antisense
GTGGAATTTCAGCTGCTTGCCACGT 50 491 802 Antisense
AATGAAGCTTCACCACGATTGCGAA 1 165 853 Antisense
AATGCTTGTGGTATTCCTGTGCACC 73 167 936 Antisense
CCTGTGCACCGAAATGCCGCAAGGC 118 267 951 Antisense
CAAGGCCTACTTTCCATTTTATCGG 520 181 970 Antisense
GCAATCTACCCGACACATGTGCATA 198 323 994 Antisense
TAAAGTCTGTTCTGTGCCGATCGAC 152 641 1127 Antisense
ACTTCGCGACGGACTGTCTTCAAAA 306 103 1150 Antisense
Sequence Source Affymetrix Proprietary Database