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[180418_at]

Description T19D7.3 /REP_DB=WormBase Gene ID /WP=CE07519 /TR=Q22583 /GB=AAK39295.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 864
1 2 3 4 range
A 78.1
(-3)
A 		704.1
(2.2)
P 		798.5
(3)
P 		167.5
(-2.3)
P 		720
B 85
(-3)
A 		847.2
(2.4)
P 		924.4
(3)
P 		106
(-2.8)
A 		839
C 60.4
(-3)
A 		828.5
(3)
P 		749.8
(2.4)
P 		182.7
(-2)
P 		768
avr 74.5
(-3) 		793.3
(2.8) 		824.2
(3) 		152.1
(-2.4) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 137.6
(-3)
P 		467.1
(0.7)
P 		346.6
(-0.7)
P 		665.9
(2.9)
P 		673.6
(3)
P 		212.5
(-2.2)
P 		536
B 161.6
(-3)
A 		527.8
(0.6)
P 		229.5
(-2.3)
P 		774
(3)
P 		693.5
(2.2)
P 		206.2
(-2.6)
P 		612
C 108.4
(-3)
P 		459.5
(1.6)
P 		377.4
(0.6)
P 		562.3
(3)
P 		544.1
(2.8)
P 		202.9
(-1.8)
P 		454
avr 135.9
(-3) 		484.8
(0.9) 		317.8
(-0.9) 		667.4
(3) 		637.1
(2.7) 		207.2
(-2.2) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 28.5
(-2.9)
A 		152.8
(1.2)
P 		208.7
(3)
P 		24.5
(-3)
P 		184
B 27.1
(-2.9)
A 		209.2
(2.8)
P 		214.2
(3)
P 		22.6
(-3)
A 		192
C 20
(-3)
A 		238.2
(2.4)
P 		261.3
(3)
P 		30.8
(-2.7)
P 		241
avr 25.2
(-3) 		200.1
(2.2) 		228.1
(3) 		26
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 25.4
(-3)
P 		166.1
(1.7)
P 		75.5
(-1.3)
P 		168.9
(1.8)
P 		203.3
(3)
P 		51.7
(-2.1)
P 		178
B 56.2
(-3)
A 		175.7
(0.2)
P 		55.7
(-3)
P 		205
(1)
P 		281.7
(3)
P 		76.9
(-2.4)
P 		226
C 40.2
(-3)
P 		140.2
(1.4)
P 		96.1
(-0.5)
P 		113.1
(0.2)
P 		176.1
(3)
P 		67.9
(-1.8)
P 		136
avr 40.6
(-3) 		160.7
(1) 		75.8
(-1.8) 		162.3
(1.1) 		220.4
(3) 		65.5
(-2.2) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18311
Sequence Type Exemplar sequence
Representative Public ID T19D7.3 NCBI
Target Description T19D7.3 /REP_DB=WormBase Gene ID /WP=CE07519 /TR=Q22583 /GB=AAK39295.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075733 NCBI Caenorhabditis elegans T19D7.3 (T19D7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000005323 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:656264:658423:1 11/11 None
T19D7.3 ENSEMBL cdna:known chromosome:CEL140:X:656187:656834:1 gene:T19D7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005311 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:656263-656834(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D7.3
Entrez Gene 180415 Entrez gene
SwissProt Q22583 EMBL-EBI
WormBase CE07519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39296 Hypothetical protein T19D7.2 [Caenorhabditis elegans] ref|NP_508135.1| T19D7.2 [Caenorhabditis elegans] 9.0E-81
blast CAE63638 Hypothetical protein CBG08134 [Caenorhabditis briggsae] 1.0E-75
blast AAK39295 Hypothetical protein T19D7.3 [Caenorhabditis elegans] ref|NP_508134.1| T19D7.3 [Caenorhabditis elegans] 2.0E-41
blast AAK39295 Hypothetical protein T19D7.3 [Caenorhabditis elegans] ref|NP_508134.1| T19D7.3 [Caenorhabditis elegans] 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508134.1 1 7-26
T19D7.3 1 7-26
GENEFINDER00000005323 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:180418_AT
aatggtctatatcacgcaacgttctacttctttactattattatttttttttcgttctca
cctgtaaactgtcagtttttggaaatatttggtttgtctactggagatgcgggaactcat
gataggggtccgtttcaggatctggctactcaatcggtcggtctcatgaaatacctgcaa
acagtgcagaagaatccagacaacactctagccaaaaaattgaaaaacccattaccttct
atgaatttggtagatggaatgcctgttgtgccaggtcttttgggaagtttaccaggagcc
ggatcgtgtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTCTATATCACGCAACGTTCT 312 163 25 Antisense
GCAACGTTCTACTTCTTTACTATTA 48 311 40 Antisense
TTTTCGTTCTCACCTGTAAACTGTC 296 677 73 Antisense
GTCTACTGGAGATGCGGGAACTCAT 116 469 120 Antisense
GGAACTCATGATAGGGGTCCGTTTC 618 529 136 Antisense
TCCGTTTCAGGATCTGGCTACTCAA 561 591 153 Antisense
CTACTCAATCGGTCGGTCTCATGAA 39 227 170 Antisense
ATCCAGACAACACTCTAGCCAAAAA 110 41 218 Antisense
GAAAAACCCATTACCTTCTATGAAT 96 355 246 Antisense
GAATGCCTGTTGTGCCAGGTCTTTT 371 329 281 Antisense
TTACCAGGAGCCGGATCGTGTTTGC 107 683 313 Antisense
Sequence Source Affymetrix Proprietary Database