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[180417_at]

Description Y43F8B.4 /REP_DB=WormBase Gene ID /WP=CE21889 /TR=Q9XWX4 /GB=CAA21512.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 70.1
(2.9)
P 		70.6
(3)
P 		69.1
(2.8)
P 		25.3
(-3)
A 		45
B 44.5
(-1.2)
P 		59.1
(3)
P 		58.2
(2.7)
P 		38.1
(-3)
A 		21
C 41
(-1.9)
A 		68.8
(1)
M 		87.7
(3)
P 		30.5
(-3)
A 		57
avr 51.9
(0.1) 		66.2
(2.2) 		71.7
(3) 		31.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 64.1
(2.7)
P 		45.3
(-0.1)
A 		38
(-1.3)
P 		66
(3)
P 		63.9
(2.7)
P 		26.5
(-3)
A 		40
B 32.6
(-3)
A 		58.5
(1.4)
P 		44.3
(-1)
M 		47.9
(-0.4)
P 		67.8
(3)
A 		42.4
(-1.3)
A 		35
C 17.8
(-1.6)
A 		10.3
(-2.3)
A 		49.9
(1.4)
A 		67.5
(3)
P 		62.7
(2.6)
P 		2.2
(-3)
A 		65
avr 38.2
(-0.9) 		38
(-0.9) 		44.1
(-0) 		60.5
(2.4) 		64.8
(3) 		23.7
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.5
(3)
P 		15.3
(0.2)
P 		18.1
(1)
P 		3.7
(-3)
A 		22
B 14.2
(2.6)
P 		14.6
(3)
P 		13.5
(2)
P 		8.1
(-3)
A 		7
C 13.6
(-1)
A 		19.8
(0.5)
M 		30.6
(3)
P 		5.1
(-3)
A 		26
avr 17.8
(1.8) 		16.6
(1.4) 		20.7
(3) 		5.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.8
(-0.5)
P 		16.1
(1.5)
A 		8.3
(-2.1)
P 		16.7
(1.8)
P 		19.3
(3)
P 		6.4
(-3)
A 		13
B 11.3
(-2.8)
A 		19.5
(0.1)
P 		10.7
(-3)
M 		12.7
(-2.3)
P 		27.5
(3)
A 		15.8
(-1.2)
A 		17
C 6.6
(-1.2)
A 		3.1
(-2.3)
A 		12.7
(0.7)
A 		13.6
(0.9)
P 		20.3
(3)
P 		0.7
(-3)
A 		20
avr 9.9
(-2.1) 		12.9
(-0.9) 		10.6
(-1.8) 		14.3
(-0.3) 		22.4
(3) 		7.6
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14585
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.4 NCBI
Target Description Y43F8B.4 /REP_DB=WormBase Gene ID /WP=CE21889 /TR=Q9XWX4 /GB=CAA21512.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075394 NCBI Caenorhabditis elegans Y43F8B.4 (Y43F8B.4) mRNA, complete cds. 11/11 None
Y43F8B.4 ENSEMBL cdna:known chromosome:CEL140:V:19513352:19516224:-1 gene:Y43F8B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027181 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19513351-19516224(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.4
Entrez Gene 189869 Entrez gene
SwissProt Q9XWX4 EMBL-EBI
WormBase CE21889 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19538 protein metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21512 Hypothetical protein Y43F8B.4 [Caenorhabditis elegans] ref|NP_507795.1| Y43F8B.4 [Caenorhabditis elegans] 0.0
blast CAE61721 Hypothetical protein CBG05671 [Caenorhabditis briggsae] 0.0
blast AAA85749 Hypothetical protein C14E2.4 [Caenorhabditis elegans] ref|NP_508333.1| C14E2.4 [Caenorhabditis elegans] 7.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 7.0E-17
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 7.5E-14
Sequence
Target Sequence 
>C. ELEGANS:180417_AT
aagtgcgggaccacttggagctcatggagcatttgaagtttgaggagcagctagtagtca
acgatgacggcaacgacatagtctcaaaaatccgaagagccaacggaacccaggtcttcc
atgaggatcacccggcagctcgatccatctgggacaccgcaaaaaacctacttcccaacc
tgaacttcaaaaccgccgaggacatcctggctttgtcctataacccaggtggccactacg
ccgcgcaccacgactatctgctataccccagcgaaaaggagtgggatgaatggatgagag
tgaatgggaaccggttcgggacccttattatggcgtttggagcagcggagagcggtggag
caactgtttttcccaggcttggagctgcagtgaggacgaagccgggtgacgcgtttttct
ggtttaacgcgatggggaattcggagcaggaagatttgtcggagcacgctggatgtccga
tttacaagggtcaaaagcagatctccacaatttggctccgcatgagggatcagccaattt
tggagcaaacgctgagctcggactcactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCGGGACCACTTGGAGCTCAT 247 159 1013 Antisense
GAACCCAGGTCTTCCATGAGGATCA 604 345 1118 Antisense
CGCCGAGGACATCCTGGCTTTGTCC 193 257 1206 Antisense
TTTGTCCTATAACCCAGGTGGCCAC 182 661 1224 Antisense
CTATCTGCTATACCCCAGCGAAAAG 314 225 1266 Antisense
TCGGGACCCTTATTATGGCGTTTGG 45 555 1328 Antisense
GGTGGAGCAACTGTTTTTCCCAGGC 309 499 1366 Antisense
TTTCCCAGGCTTGGAGCTGCAGTGA 291 671 1381 Antisense
GAGCACGCTGGATGTCCGATTTACA 580 387 1474 Antisense
AGCAGATCTCCACAATTTGGCTCCG 287 77 1508 Antisense
AAACGCTGAGCTCGGACTCACTTTC 610 125 1559 Antisense
Sequence Source Affymetrix Proprietary Database