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[180416_at]

Description M02B7.1 /REP_DB=WormBase Gene ID /WP=CE12320 /TR=Q94286 /GB=AAB09127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 16      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 109.9
(-3)
P 		129.2
(-0.7)
P 		151.6
(2)
P 		159.9
(3)
P 		50
B 121
(-3)
P 		124.9
(-2.7)
P 		122.6
(-2.9)
P 		204.1
(3)
P 		83
C 97.7
(-3)
P 		123.1
(-1)
P 		136
(0)
P 		174.2
(3)
P 		77
avr 109.5
(-3) 		125.7
(-1.6) 		136.7
(-0.7) 		179.4
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 118.8
(-3)
P 		148.2
(-2.3)
P 		187.9
(-1.4)
P 		214.4
(-0.8)
P 		381.9
(3)
P 		333.2
(1.9)
P 		263
B 103.6
(-3)
P 		126.1
(-2.6)
P 		171.9
(-1.9)
P 		267.6
(-0.4)
P 		338.4
(0.7)
P 		488.8
(3)
P 		385
C 102.6
(-3)
P 		133.8
(-2.5)
P 		154.7
(-2.1)
P 		246.5
(-0.6)
P 		309.1
(0.5)
P 		460.8
(3)
P 		358
avr 108.3
(-3) 		136
(-2.5) 		171.5
(-1.8) 		242.8
(-0.5) 		343.1
(1.4) 		427.6
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 40
(3)
P 		28.1
(-1.3)
P 		39.6
(2.9)
P 		23.4
(-3)
P 		17
B 38.6
(1.1)
P 		30.8
(-2)
P 		28.4
(-3)
P 		43.5
(3)
P 		15
C 32.4
(-2)
P 		35.4
(-1)
P 		47.4
(3)
P 		29.4
(-3)
P 		18
avr 37
(1.7) 		31.4
(-3) 		38.5
(3) 		32.1
(-2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 21.9
(-3)
P 		52.7
(-1)
P 		40.9
(-1.8)
P 		54.4
(-0.9)
P 		115.2
(3)
P 		81.1
(0.8)
P 		93
B 36
(-3)
P 		42
(-2.8)
P 		41.8
(-2.8)
P 		70.9
(-1.6)
P 		137.5
(1.2)
P 		182.3
(3)
P 		146
C 38
(-3)
P 		40.8
(-2.9)
P 		39.4
(-2.9)
P 		49.6
(-2.4)
P 		100
(0.2)
P 		154.3
(3)
P 		116
avr 32
(-3) 		45.2
(-2.3) 		40.7
(-2.5) 		58.3
(-1.5) 		117.6
(1.8) 		139.2
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10665
Sequence Type Exemplar sequence
Representative Public ID M02B7.1 NCBI
Target Description M02B7.1 /REP_DB=WormBase Gene ID /WP=CE12320 /TR=Q94286 /GB=AAB09127.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068018 NCBI Caenorhabditis elegans M02B7.1 (M02B7.1) mRNA, complete cds. 11/11 None
SNAP00000028170 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3805547:3806562:1 11/11 None
GENEFINDER00000028177 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3805547:3806562:1 11/11 None
M02B7.1 ENSEMBL cdna:known chromosome:CEL140:IV:3805547:3806562:1 gene:M02B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3805552-3806568(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B7.1
Entrez Gene 187396 Entrez gene
SwissProt Q94286 EMBL-EBI
WormBase CE12320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 1.0E-161
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 8.0E-76
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 4.0E-55
Sequence
Target Sequence 
>C. ELEGANS:180416_AT
tattggtcgtctgacaatccgcttattgatcgatttatcgatcgtaaaagcatcccatta
tattcaatcattatcccgcaatctctctcaatggaaatgctgtcacgaattgagcaagac
gagattttgaagacggctaaacacttggatattcgtcatgttcctcgagaactttttcac
ttatttggaactctgcccaacaaactagccttaacttacatttatagtggagaagttttc
gattttctcaatttgatcgacactatgatccagcaaaatcggaaagaaggcttatctcgt
tgcttcgtgacttgcgatgtcgaattggtggaagatttatacaaagtgttccgtgtactg
gcagaagataaagattctgcgatttttgacattgaggaatatgaagagtatgttgaattt
gatgaagatttcatcaaatgcaatgaattcccaaatgaaatcgcattttggatcgatgat
acgatggtcatttccgttaaagctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGGTCGTCTGACAATCCGCTTA 578 647 361 Antisense
TATTCAATCATTATCCCGCAATCTC 604 663 421 Antisense
GGCTAAACACTTGGATATTCGTCAT 103 539 495 Antisense
GTTCCTCGAGAACTTTTTCACTTAT 593 441 520 Antisense
TTTCACTTATTTGGAACTCTGCCCA 415 673 535 Antisense
ACTCTGCCCAACAAACTAGCCTTAA 487 99 550 Antisense
AGAAGGCTTATCTCGTTGCTTCGTG 244 75 645 Antisense
GTTGCTTCGTGACTTGCGATGTCGA 101 439 659 Antisense
CAAAGTGTTCCGTGTACTGGCAGAA 310 193 702 Antisense
GATTCTGCGATTTTTGACATTGAGG 414 431 733 Antisense
CGATGGTCATTTCCGTTAAAGCTAT 506 247 842 Antisense
Sequence Source Affymetrix Proprietary Database