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[180415_s_at]

Description B0379.7B /REP_DB=WormBase Gene ID /WP=CE23508 /TR=Q9U3S6 /GB=CAB54186.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 21.1
(-3)
A 		48.8
(-1.1)
A 		39.9
(-1.7)
A 		107.4
(3)
A 		86
B 21.6
(-2.3)
A 		23.5
(-2.1)
A 		13.4
(-3)
A 		81.3
(3)
A 		68
C 34.6
(3)
A 		14.4
(-1.5)
A 		7.8
(-3)
A 		32.9
(2.6)
A 		27
avr 25.8
(-2.4) 		28.9
(-2) 		20.4
(-3) 		73.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 24.9
(-2.4)
A 		26
(-2.4)
A 		10.6
(-3)
A 		27.9
(-2.3)
A 		144
(2.4)
A 		157.5
(3)
P 		147
B 18.2
(-2.6)
A 		7.9
(-3)
A 		47.8
(-1.4)
A 		27.2
(-2.2)
A 		98.5
(0.6)
A 		158.2
(3)
P 		150
C 7.4
(-3)
A 		11.2
(-2.9)
A 		19
(-2.6)
A 		21.4
(-2.6)
A 		112.6
(0.3)
A 		197.4
(3)
P 		190
avr 16.8
(-2.9) 		15
(-3) 		25.8
(-2.6) 		25.5
(-2.6) 		118.4
(1) 		171
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.7
(-3)
A 		10.6
(-0.8)
A 		10.4
(-1)
A 		15.7
(3)
A 		8
B 6.9
(-1.4)
A 		5.8
(-1.9)
A 		3.1
(-3)
A 		17.3
(3)
A 		14
C 11.4
(3)
A 		4.1
(-2)
A 		2.7
(-3)
A 		5.6
(-1)
A 		9
avr 8.7
(-0.4) 		6.8
(-1.9) 		5.4
(-3) 		12.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 4.6
(-2.7)
A 		9.3
(-2)
A 		2.3
(-3)
A 		7.1
(-2.3)
A 		43.5
(3)
A 		38.3
(2.2)
P 		41
B 6.3
(-2.6)
A 		2.6
(-3)
A 		11.6
(-2)
A 		7.2
(-2.5)
A 		40
(1)
A 		59
(3)
P 		56
C 2.7
(-3)
A 		3.4
(-2.9)
A 		4.8
(-2.8)
A 		4.3
(-2.8)
A 		36.4
(0.2)
A 		66.1
(3)
P 		63
avr 4.5
(-3) 		5.1
(-2.9) 		6.2
(-2.8) 		6.2
(-2.8) 		40
(1.3) 		54.5
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180415_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1537
Sequence Type Exemplar sequence
Representative Public ID B0379.7B NCBI
Target Description B0379.7B /REP_DB=WormBase Gene ID /WP=CE23508 /TR=Q9U3S6 /GB=CAB54186.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170916 NCBI Caenorhabditis elegans B0379.7 (B0379.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000021514 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10079043:10082149:-1 11/11 None
SNAP00000021507 ENSEMBL cdna:SNAP chromosome:CEL140:I:10080745:10082149:-1 11/11 None
B0379.7.1 ENSEMBL cdna:known chromosome:CEL140:I:10080729:10082507:-1 gene:B0379.7 11/11 A 
B0379.7.2 ENSEMBL cdna:known chromosome:CEL140:I:10080729:10082183:-1 gene:B0379.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10080675-10082080(-) 95.45 100.0
Public Domain and Genome References
Gene Title
Ensembl B0379.7
Entrez Gene 172871 Entrez gene
SwissProt Q9U3S6 EMBL-EBI
WormBase CE23508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54186 Hypothetical protein B0379.7 [Caenorhabditis elegans] ref|NP_740910.1| B0379.7 [Caenorhabditis elegans] 1.0E-118
blast T18723 hypothetical protein B0379.7 - Caenorhabditis elegans 1.0E-116
blast T18723 hypothetical protein B0379.7 - Caenorhabditis elegans 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740910.1 1 2-18
B0379.7.1 1 2-18
B0379.7.2 1 2-18
GENEFINDER00000021514 1 2-18
SNAP00000021507 1 2-18
Sequence
Target Sequence 
>C. ELEGANS:180415_S_AT
tgctcctgcttctactgaatcgaagaaatcgaagaaaattaaaaagaagaagaacaagaa
gtcgaaggataagaagaaatcaaacagtcgcaaaaacaagaaaaataagaaaagcaaggg
aaagagcacatctacttctgagcctccaactccaaatcaaccggaaactggagttcaaac
tgccaacgaacttcgtaacgatgctcctgaatcaaatgtgaacactgccatgtcaatcca
atctccagttcaagatactccagaacctgatgtcaaaaccgcttctgaagccaaaaacga
cattccagaatctggtgtgaagactgctgcagaggtaaagaatgatgttcctgaatcagg
agtcaagactgccgccgaagcaaagaacgatgcttttgagagtgatgttaagtctgcaat
cgaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCTGCTTCTACTGAATCGAAG 565 581 627 Antisense
AAGAGCACATCTACTTCTGAGCCTC 55 155 748 Antisense
TCCAACTCCAAATCAACCGGAAACT 299 583 771 Antisense
TTCAAACTGCCAACGAACTTCGTAA 104 685 800 Antisense
ACTTCGTAACGATGCTCCTGAATCA 468 101 816 Antisense
AACACTGCCATGTCAATCCAATCTC 113 137 847 Antisense
CAATCTCCAGTTCAAGATACTCCAG 598 181 865 Antisense
ACCTGATGTCAAAACCGCTTCTGAA 260 87 891 Antisense
GAATCAGGAGTCAAGACTGCCGCCG 225 327 979 Antisense
GACTGCCGCCGAAGCAAAGAACGAT 601 373 993 Antisense
GTGATGTTAAGTCTGCAATCGAGGC 59 485 1028 Antisense
Sequence Source Affymetrix Proprietary Database