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[180414_at]

Description F53G2.3 /REP_DB=WormBase Gene ID /WP=CE10994 /TR=O17246 /GB=AAB71013.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 28
(-1.7)
A 		43.4
(-0.4)
A 		12.2
(-3)
A 		83.2
(3)
A 		71
B 3.6
(-3)
A 		62.2
(3)
P 		20.3
(-1.3)
A 		32.5
(-0)
A 		59
C 28.1
(-1.7)
A 		52.5
(-0.3)
A 		4.4
(-3)
A 		112.5
(3)
P 		108
avr 19.9
(-2.3) 		52.7
(0.8) 		12.3
(-3) 		76.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 28.9
(0.5)
A 		34.5
(1.3)
A 		7.4
(-2.9)
A 		6.5
(-3)
A 		45.2
(3)
A 		28.2
(0.4)
A 		39
B 39.7
(3)
A 		35.6
(2.4)
A 		35.7
(2.4)
A 		1.8
(-3)
A 		13.5
(-1.1)
A 		17.7
(-0.5)
A 		38
C 21.9
(-3)
A 		54.6
(3)
A 		25.7
(-2.3)
A 		33.3
(-0.9)
A 		32.5
(-1.1)
A 		24
(-2.6)
A 		33
avr 30.2
(0.5) 		41.6
(3) 		22.9
(-1.1) 		13.9
(-3) 		30.4
(0.6) 		23.3
(-1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.2
(1.7)
A 		9.4
(1.1)
A 		3.2
(-3)
A 		12.2
(3)
A 		9
B 1.1
(-3)
A 		15.4
(3)
P 		4.7
(-1.5)
A 		6.9
(-0.6)
A 		14
C 9.3
(-0.3)
A 		15.1
(1.7)
A 		1.5
(-3)
A 		19
(3)
P 		18
avr 6.9
(-0.8) 		13.3
(3) 		3.1
(-3) 		12.7
(2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.3
(-1.2)
A 		12.3
(2.4)
A 		1.6
(-3)
A 		1.7
(-3)
A 		13.6
(3)
A 		6.9
(-0.4)
A 		12
B 13.8
(3)
A 		11.8
(2.1)
A 		8.7
(0.7)
A 		0.5
(-3)
A 		5.5
(-0.7)
A 		6.6
(-0.2)
A 		13
C 8.1
(-2.1)
A 		16.7
(3)
A 		6.5
(-3)
A 		6.7
(-2.9)
A 		10.5
(-0.6)
A 		8
(-2.1)
A 		10
avr 9.1
(0.5) 		13.6
(3) 		5.6
(-1.5) 		3
(-3) 		9.9
(0.9) 		7.2
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4203
Sequence Type Exemplar sequence
Representative Public ID F53G2.3 NCBI
Target Description F53G2.3 /REP_DB=WormBase Gene ID /WP=CE10994 /TR=O17246 /GB=AAB71013.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061880(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061880 NCBI Caenorhabditis elegans F53G2.3 (F53G2.3) mRNA, complete cds. 9/11 None
GENEFINDER00000030763 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2480400:2485903:1 9/11 None
F53G2.3 ENSEMBL cdna:known chromosome:CEL140:II:2480400:2481313:1 gene:F53G2.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030756 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2480398-2481392(+) 78.33 100.0
Public Domain and Genome References
Gene Title
Ensembl F53G2.3
Entrez Gene 186186 Entrez gene
SwissProt O17246 EMBL-EBI
WormBase CE36863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71012 Hypothetical protein F53G2.2 [Caenorhabditis elegans] ref|NP_494282.2| F53G2.2 [Caenorhabditis elegans] 0.0
blast AAB71013 Hypothetical protein F53G2.3 [Caenorhabditis elegans] ref|NP_494281.2| F53G2.3 [Caenorhabditis elegans] 4.0E-62
blast AAB71013 Hypothetical protein F53G2.3 [Caenorhabditis elegans] ref|NP_494281.2| F53G2.3 [Caenorhabditis elegans] 4.0E-50
blast AAB71012 Hypothetical protein F53G2.2 [Caenorhabditis elegans] ref|NP_494282.2| F53G2.2 [Caenorhabditis elegans] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:180414_AT
attatcctcttgatttgcgctcattgtgcattttcggatagattggacgctggaagtcag
gcggattgtgtggctgctgccaataaaatctacaacaacgaatggggatttgatcataaa
ttggtatacgacaaggagctcgagccgttcgcagcagaaactccatgtggcatcgcctat
ttgcagaatggactcgcagaagttggtagcggtggagctcacacctcggtgaatctcaga
gaagagcataccagaatcgcgtgtgtcccgaaaaagtgcggtggggtggaggtggcgtgt
gctgtgggtggtcccagtatggccctaaatttaaagcgcaaaattcgaaaattgcgccag
attcggtgcttgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATCCTCTTGATTTGCGCTCATT 667 13 25 Antisense
GCGCTCATTGTGCATTTTCGGATAG 255 287 41 Antisense
GTCAGGCGGATTGTGTGGCTGCTGC 206 467 80 Antisense
GGCTGCTGCCAATAAAATCTACAAC 109 541 96 Antisense
TACGACAAGGAGCTCGAGCCGTTCG 572 645 151 Antisense
GCAGAAACTCCATGTGGCATCGCCT 331 311 178 Antisense
GGCATCGCCTATTTGCAGAATGGAC 621 535 193 Antisense
TGGAGCTCACACCTCGGTGAATCTC 163 549 237 Antisense
GAGCATACCAGAATCGCGTGTGTCC 271 389 268 Antisense
TGCTGTGGGTGGTCCCAGTATGGCC 282 583 324 Antisense
ATTGCGCCAGATTCGGTGCTTGCGT 330 7 375 Antisense
Sequence Source Affymetrix Proprietary Database