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[180413_at]

Description E02H9.6 /REP_DB=WormBase Gene ID /WP=CE09123 /TR=Q9TZA2 /GB=AAC68771.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 38.5
(-2.5)
A 		31.8
(-3)
A 		65.4
(-0.7)
A 		119.5
(3)
A 		88
B 41.8
(0.5)
P 		33.9
(-3)
A 		46.9
(2.8)
A 		47.3
(3)
A 		13
C 44.6
(-2)
A 		35.6
(-2.8)
A 		32.9
(-3)
A 		101.4
(3)
A 		69
avr 41.6
(-2.2) 		33.8
(-3) 		48.4
(-1.4) 		89.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 8.3
(-2.4)
A 		35.2
(0.1)
A 		65.1
(3)
A 		35.7
(0.2)
A 		19.4
(-1.4)
A 		2.4
(-3)
A 		63
B 25.7
(-2.3)
A 		26.3
(-2.2)
A 		31.5
(-1.2)
A 		46.5
(1.7)
A 		53.2
(3)
A 		22.2
(-3)
A 		31
C 24.6
(-0.7)
A 		55.1
(3)
A 		11
(-2.4)
A 		43.6
(1.6)
A 		5.8
(-3)
A 		32.9
(0.3)
A 		49
avr 19.5
(-2.9) 		38.9
(2.2) 		35.9
(1.4) 		41.9
(3) 		26.1
(-1.2) 		19.2
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 14
(1)
A 		6.9
(-3)
A 		17.1
(2.8)
A 		17.5
(3)
A 		11
B 13.3
(3)
P 		8.4
(-3)
A 		10.9
(0.1)
A 		10.1
(-0.9)
A 		5
C 14.8
(1)
A 		10.2
(-3)
A 		11.5
(-1.9)
A 		17.1
(3)
A 		7
avr 14
(2.2) 		8.5
(-3) 		13.2
(1.4) 		14.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.5
(-2.6)
A 		12.5
(2.3)
A 		14.2
(3)
A 		9.1
(0.8)
A 		5.9
(-0.7)
A 		0.6
(-3)
A 		14
B 8.9
(-2.5)
A 		8.8
(-2.5)
A 		7.7
(-3)
A 		12.3
(-1)
A 		21.6
(3)
A 		8.3
(-2.7)
A 		14
C 9.1
(-0.1)
A 		16.8
(3)
A 		2.8
(-2.6)
A 		8.8
(-0.2)
A 		1.9
(-3)
A 		11
(0.7)
A 		15
avr 6.5
(-3) 		12.7
(3) 		8.2
(-1.4) 		10.1
(0.5) 		9.8
(0.2) 		6.6
(-2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7114
Sequence Type Exemplar sequence
Representative Public ID E02H9.6 NCBI
Target Description E02H9.6 /REP_DB=WormBase Gene ID /WP=CE09123 /TR=Q9TZA2 /GB=AAC68771.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065155 NCBI Caenorhabditis elegans E02H9.6 (E02H9.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000038964 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2440212:2444403:1 9/11 None
E02H9.6 ENSEMBL cdna:known chromosome:CEL140:III:2436093:2442316:1 gene:E02H9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2436092-2442316(+) 92.05 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H9.6
Entrez Gene 184001 Entrez gene
SwissProt Q9TZA2 EMBL-EBI
WormBase CE09123 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68771 Hypothetical protein E02H9.6 [Caenorhabditis elegans] ref|NP_497556.1| E02H9.6 [Caenorhabditis elegans] 0.0
blast AAC68919 Hypothetical protein W04B5.6 [Caenorhabditis elegans] ref|NP_497555.1| W04B5.6 [Caenorhabditis elegans] 1.0E-100
blast AAC68771 Hypothetical protein E02H9.6 [Caenorhabditis elegans] ref|NP_497556.1| E02H9.6 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497556.1 6 13-32,47-64,76-98,108-125,277-299,348-367
E02H9.6 6 13-32,47-64,76-98,108-125,277-299,348-367
GENEFINDER00000038964 2 64-83,103-125
Sequence
Target Sequence 
>C. ELEGANS:180413_AT
gcccgcgttctgaagtttttagaattagagaataatgctgaaaatctaaaaattacttca
aagttcttccaaaatattccccttgagtctgcttccaccatgacaatctctctgacgttg
ttcctttctgtttttgtttctcttcttcagagaaacgggcgtaccgcgacagtttgtccc
tcaagtctcacgttaacgaaattaattgatgttatttttatatttccgcgttctataatt
tcgatattttttcgccatcatacgatacgatatttgttgcaaaacccgatatatatccaa
atccctacactcctttgtgcaattccattaatcaatggaataaatctccaaagaacagtg
tacagtaagataatttataatctattatgtagtatatatcacaaaaaagacaaatactta
aaggaaacaaaaaatctcgaattaaaaaatcttaatagtaagaattttgaaaattccaaa
attaaaaaaaattctgaattacgatgcagccaaacttgcaccaaagtacatgttcaagaa
tggaaatgttttatgaacatgtcctcggcatgcaccaaaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGCGTTCTGAAGTTTTTAGAAT 426 283 766 Antisense
CAAAATATTCCCCTTGAGTCTGCTT 161 191 835 Antisense
TGACAATCTCTCTGACGTTGTTCCT 703 571 866 Antisense
CAGAGAAACGGGCGTACCGCGACAG 660 183 913 Antisense
TCCCTCAAGTCTCACGTTAACGAAA 549 589 942 Antisense
ATATTTCCGCGTTCTATAATTTCGA 228 19 985 Antisense
TTCGATATTTTTTCGCCATCATACG 131 697 1005 Antisense
GATATATATCCAAATCCCTACACTC 390 425 1053 Antisense
TCCTTTGTGCAATTCCATTAATCAA 164 591 1076 Antisense
TGTTTTATGAACATGTCCTCGGCAT 600 561 1312 Antisense
ATGTCCTCGGCATGCACCAAAAATA 168 49 1324 Antisense
Sequence Source Affymetrix Proprietary Database