[Home] | [Total List]

[180411_at]

Description W10C8.3 /REP_DB=WormBase Gene ID /WP=CE18351 /TR=O45008 /GB=AAK21501.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(-3)
A 		3.1
(-2.5)
A 		3.6
(-2.1)
A 		9.9
(3)
A 		7
B 4.4
(1.7)
A 		5
(3)
A 		4.8
(2.6)
A 		2.2
(-3)
A 		3
C 8.4
(3)
A 		5.6
(-1.2)
A 		4.4
(-3)
A 		6.4
(0)
A 		4
avr 5.1
(-0.5) 		4.6
(-2.1) 		4.3
(-3) 		6.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.1
(-2.1)
A 		14.2
(3)
A 		2.4
(-3)
A 		4.3
(-2)
A 		3.7
(-2.3)
A 		2.9
(-2.7)
A 		12
B 4.2
(2.1)
A 		2.8
(-1.9)
A 		2.4
(-3)
A 		4.5
(3)
A 		4.1
(1.9)
A 		3.4
(-0.1)
A 		2
C 2.6
(-2.3)
A 		3
(-2.1)
A 		2.8
(-2.2)
A 		5.3
(-0.6)
A 		1.6
(-3)
A 		10.7
(3)
A 		9
avr 3.6
(-1.4) 		6.7
(3) 		2.5
(-3) 		4.7
(0.1) 		3.1
(-2.1) 		5.7
(1.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-1.5)
A 		0.7
(-3)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		1
B 1.4
(3)
A 		1.2
(1.7)
A 		1.1
(1)
A 		0.5
(-3)
A 		1
C 2.8
(3)
A 		1.6
(-1.2)
A 		1.5
(-1.6)
A 		1.1
(-3)
A 		2
avr 1.7
(3) 		1.2
(-1.3) 		1.2
(-1.3) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		5.1
(3)
A 		0.5
(-3)
A 		1.1
(-2.2)
A 		1.1
(-2.2)
A 		0.7
(-2.7)
A 		5
B 1.5
(1.9)
A 		0.9
(-1.4)
A 		0.6
(-3)
A 		1.2
(0.3)
A 		1.7
(3)
A 		1.3
(0.8)
A 		1
C 1
(-2)
A 		0.9
(-2.2)
A 		0.7
(-2.6)
A 		1.1
(-1.8)
A 		0.5
(-3)
A 		3.6
(3)
A 		3
avr 1.1
(-1.2) 		2.3
(3) 		0.6
(-3) 		1.1
(-1.2) 		1.1
(-1.2) 		1.9
(1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.100
Sequence Type Exemplar sequence
Representative Public ID W10C8.3 NCBI
Target Description W10C8.3 /REP_DB=WormBase Gene ID /WP=CE18351 /TR=O45008 /GB=AAK21501.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058653
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W10C8.3 ENSEMBL cdna:known chromosome:CEL140:I:2832873:2833254:-1 gene:W10C8.3 None
NM_058653 NCBI Caenorhabditis elegans W10C8.3 (W10C8.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2832249-2833254(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10C8.3
Entrez Gene 189331 Entrez gene
SwissProt O45008 EMBL-EBI
WormBase CE32744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491054 W10C8.3 [Caenorhabditis elegans] gb|AAK21501.2| Hypothetical protein W10C8.3 [Caenorhabditis elegans] 2.0E-28
blast G87731 protein W10C8.3 [imported] - Caenorhabditis elegans 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491054.2 1 34-56
W10C8.3 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:180411_AT
aagtgcggatagctggctgtcgccacgcaattttcaaattaggcaggcaagaaaaatgga
tgaattttcgagatgcgtatctctccgcgcgacgattgcgctcatcgccagagccaccac
ctccccctatttactaaaaacctgtcacctttcctatggacactcattgtctgttacgcc
tggtggctcaacaacatctgcctctcgattttctctaattttctgttcccgaaatacagc
caaatttatttttttcaagctttttcgttgcattttctccaattttagtctccgttttcc
caacatcctcgtttttacacttgtccaggtaattttctctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCGGATAGCTGGCTGTCGCCA 555 157 18 Antisense
GCTGTCGCCACGCAATTTTCAAATT 614 295 33 Antisense
TTTTCGAGATGCGTATCTCTCCGCG 592 677 82 Antisense
TGTCACCTTTCCTATGGACACTCAT 354 559 160 Antisense
CACTCATTGTCTGTTACGCCTGGTG 32 197 178 Antisense
GCCTGGTGGCTCAACAACATCTGCC 14 283 195 Antisense
CCTCTCGATTTTCTCTAATTTTCTG 662 267 218 Antisense
TTTTCTGTTCCCGAAATACAGCCAA 226 677 236 Antisense
CAAGCTTTTTCGTTGCATTTTCTCC 111 187 273 Antisense
CAACATCCTCGTTTTTACACTTGTC 177 189 318 Antisense
ACTTGTCCAGGTAATTTTCTCTAAT 335 105 336 Antisense
Sequence Source Affymetrix Proprietary Database