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[180410_at]

Description Y39G8B.7 /REP_DB=WormBase Gene ID /WP=CE24248 /TR=Q9U2J2 /GB=CAB60339.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 56      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 686
1 2 3 4 range
A 93.3
(-2.5)
P 		159.8
(-1.9)
P 		680.4
(3)
P 		43.4
(-3)
A 		637
B 89.5
(-2.8)
P 		140.1
(-2.3)
P 		729
(3)
P 		65.9
(-3)
A 		663
C 119.6
(-2.1)
P 		107
(-2.3)
P 		574.5
(3)
P 		42.7
(-3)
A 		532
avr 100.8
(-2.5) 		135.6
(-2.2) 		661.3
(3) 		50.7
(-3) 		611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1039
1 2 3 4 5 6 range
A 68.9
(-2.8)
A 		44.4
(-3)
A 		419.5
(-0.3)
P 		846.6
(2.8)
P 		869.2
(3)
P 		428
(-0.2)
P 		825
B 21.3
(-3)
A 		69.5
(-2.7)
A 		535
(0.4)
P 		932.7
(3)
P 		698.6
(1.5)
P 		488.8
(0.1)
P 		911
C 5.4
(-3)
A 		70.6
(-2.6)
A 		372.6
(-0.9)
P 		1044.3
(3)
P 		720.7
(1.1)
P 		393
(-0.8)
P 		1039
avr 31.9
(-3) 		61.5
(-2.8) 		442.4
(-0.3) 		941.2
(3) 		762.8
(1.8) 		436.6
(-0.3) 		909
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 34
(-2)
P 		34.7
(-2)
P 		177.9
(3)
P 		6.4
(-3)
A 		172
B 28.5
(-2.4)
P 		34.6
(-2.2)
P 		168.9
(3)
P 		14.1
(-3)
A 		155
C 39.6
(-2)
P 		30.8
(-2.3)
P 		200.2
(3)
P 		7.2
(-3)
A 		193
avr 34
(-2.1) 		33.4
(-2.2) 		182.3
(3) 		9.2
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 12.7
(-3)
A 		15.8
(-2.9)
A 		91.4
(-1.1)
P 		214.7
(1.9)
P 		262.3
(3)
P 		104.2
(-0.8)
P 		250
B 7.4
(-3)
A 		23.1
(-2.7)
A 		129.9
(-0.3)
P 		247
(2.2)
P 		283.8
(3)
P 		182.3
(0.8)
P 		276
C 2
(-3)
A 		21.5
(-2.5)
A 		94.8
(-0.6)
P 		210
(2.4)
P 		233.2
(3)
P 		131.6
(0.4)
P 		231
avr 7.4
(-3) 		20.1
(-2.7) 		105.4
(-0.7) 		223.9
(2.1) 		259.8
(3) 		139.4
(0.1) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3987
Sequence Type Exemplar sequence
Representative Public ID Y39G8B.7 NCBI
Target Description Y39G8B.7 /REP_DB=WormBase Gene ID /WP=CE24248 /TR=Q9U2J2 /GB=CAB60339.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064529 NCBI Caenorhabditis elegans Y39G8B.7 (Y39G8B.7) mRNA, complete cds. 11/11 None
Y39G8B.7 ENSEMBL cdna:known chromosome:CEL140:II:13994320:13994937:-1 gene:Y39G8B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13994331-13994923(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G8B.7
Entrez Gene 189765 Entrez gene
SwissProt Q9U2J2 EMBL-EBI
WormBase CE24248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60339 Hypothetical protein Y39G8B.7 [Caenorhabditis elegans] ref|NP_496930.1| Y39G8B.7 [Caenorhabditis elegans] 1.0E-111
blast T26772 hypothetical protein Y39G8B.g - Caenorhabditis elegans 5.0E-68
blast CAB04039 Hypothetical protein F01D5.1 [Caenorhabditis elegans] ref|NP_496932.1| F01D5.1 [Caenorhabditis elegans] 9.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.9E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.0E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.1E-12
Sequence
Target Sequence 
>C. ELEGANS:180410_AT
aacttcccaagacaaaccatgcattgatgatccggatgttgattgcgcctccttcaaaga
tgactgtactaaccctaaactgctcccactgttgacccagtcctgcccggtaacctgcaa
cctgtgtccctctaccgtatcgccaacaactcttgcaccatgttttgacgacaaaagcgt
caattgtaatgtcttcaagaaaaattgcaatgacccagattacatccccatgctgaagaa
gttttgtccagagacttgtaatatgtgcccaggagctaccactccgactcctgattcaaa
ttgtaaggattgcagtccaaactgtgctagttgggccaagaggggcttctgcaccaactg
ctgctattcatgccaagaccgagagaggtactgtgcaaaaacgtgtggattctgctcggc
cggaacttgcaaggaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCCCAAGACAAACCATGCATT 23 139 60 Antisense
ATGATCCGGATGTTGATTGCGCCTC 243 47 86 Antisense
TTGCGCCTCCTTCAAAGATGACTGT 497 701 102 Antisense
ATGACTGTACTAACCCTAAACTGCT 643 43 119 Antisense
TGCAATGACCCAGATTACATCCCCA 247 575 265 Antisense
TAATATGTGCCCAGGAGCTACCACT 426 635 318 Antisense
CACTCCGACTCCTGATTCAAATTGT 390 197 339 Antisense
TTGGGCCAAGAGGGGCTTCTGCACC 209 611 390 Antisense
CACCAACTGCTGCTATTCATGCCAA 352 203 411 Antisense
AAAAACGTGTGGATTCTGCTCGGCC 66 131 456 Antisense
GCTCGGCCGGAACTTGCAAGGAATG 688 295 473 Antisense
Sequence Source Affymetrix Proprietary Database