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[180409_at]

Description F17C11.5 /REP_DB=WormBase Gene ID /WP=CE05652 /TR=Q19516 /GB=CAA96627.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 57      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 147.7
(2)
P 		87.9
(-0.7)
A 		37.5
(-3)
A 		170
(3)
P 		133
B 55.5
(-3)
A 		96.8
(-0.1)
P 		95.7
(-0.2)
M 		141.8
(3)
P 		86
C 131.5
(2.6)
P 		125.9
(2.1)
P 		64.9
(-3)
P 		136.6
(3)
P 		72
avr 111.6
(0.3) 		103.5
(-0.3) 		66
(-3) 		149.5
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 107.5
(-0.6)
P 		72.4
(-1.9)
P 		93.9
(-1.1)
P 		85.4
(-1.4)
P 		43.9
(-3)
P 		203
(3)
P 		159
B 121.2
(-0.2)
P 		100.6
(-1.8)
P 		128.7
(0.3)
P 		83.7
(-3)
P 		94.3
(-2.2)
P 		165.2
(3)
P 		82
C 112.7
(-1.5)
P 		129.2
(-0.2)
P 		94.1
(-3)
P 		170.4
(3)
P 		101.9
(-2.4)
P 		118.5
(-1.1)
P 		76
avr 113.8
(-0.5) 		100.7
(-1.5) 		105.6
(-1.1) 		113.2
(-0.6) 		80
(-3) 		162.2
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 53.8
(3)
P 		19.1
(-1.7)
A 		9.8
(-3)
A 		24.9
(-0.9)
P 		44
B 17.7
(-3)
A 		23.9
(-0)
P 		22.2
(-0.8)
M 		30.2
(3)
P 		13
C 43.5
(3)
P 		36.2
(0.9)
P 		22.6
(-3)
P 		23
(-2.9)
P 		21
avr 38.3
(3) 		26.4
(-0.6) 		18.2
(-3) 		26
(-0.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 19.8
(-1.9)
P 		25.7
(-0.9)
P 		20.4
(-1.8)
P 		21.7
(-1.6)
P 		13.2
(-3)
P 		49.4
(3)
P 		36
B 42.2
(0)
P 		33.5
(-1.3)
P 		31.2
(-1.6)
P 		22.2
(-3)
P 		38.3
(-0.5)
P 		61.6
(3)
P 		39
C 41.8
(3)
P 		39.4
(2.2)
P 		24
(-3)
P 		34.3
(0.5)
P 		33
(0)
P 		39.7
(2.3)
P 		18
avr 34.6
(-0.7) 		32.9
(-1.2) 		25.2
(-3) 		26.1
(-2.8) 		28.2
(-2.3) 		50.2
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14687
Sequence Type Exemplar sequence
Representative Public ID F17C11.5 NCBI
Target Description F17C11.5 /REP_DB=WormBase Gene ID /WP=CE05652 /TR=Q19516 /GB=CAA96627.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073394 NCBI Caenorhabditis elegans F17C11.5 (F17C11.5) mRNA, complete cds. 11/11 None
SNAP00000033898 ENSEMBL cdna:SNAP chromosome:CEL140:V:10956088:10957005:-1 11/11 None
GENEFINDER00000033916 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10956088:10957005:-1 11/11 None
F17C11.5 ENSEMBL cdna:known chromosome:CEL140:V:10956088:10957005:-1 gene:F17C11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10956087-10957005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17C11.5
Entrez Gene 184615 Entrez gene
SwissProt Q19516 EMBL-EBI
WormBase CE05652 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96627 Hypothetical protein F17C11.5 [Caenorhabditis elegans] ref|NP_505795.1| F17C11.5 [Caenorhabditis elegans] 1.0E-121
blast CAE75132 Hypothetical protein CBG23060 [Caenorhabditis briggsae] 1.0E-70
blast CAB05156 Hypothetical protein C49C3.11 [Caenorhabditis elegans] ref|NP_503089.1| C49C3.11 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:180409_AT
atggttcattccttttcagttcttctcgtccttgggacactcttctactactctcaagct
caaaacgcagctcaagaagtaaaaacacaagtaccaaaatgtaacctttggcaaggaaaa
tgtccaccaggatggaaaactttcattcgaccaccaggtgtccgtatttgccttaaaatc
ataaatcaaaatgccacttatctggaagctcagaatatttgccgtaagcagtacaactca
agaattcatggaatcgaaaacaaagaagaacacaactgggtgaaaatgaaatcaaggctg
gttattaaacagggtgcttcattcatgtgggtcggagctcgtcggaagtcgtggtgttac
aaaaccgaagctcaattaaagactgatgacaaatgcaagagtggtctgaatagttttgaa
tgggatgatcaactgactgatggatcatatctgttcactcaatgggataagactatttct
gctccagaaggaattatgagtaacaatgctccagaagactgcgttgtgatgaatgttcat
gaaggagatgcacctattgatgacaaagattgctcacttcctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTCATTCCTTTTCAGTTCTTC 158 51 13 Antisense
TCTACTACTCTCAAGCTCAAAACGC 595 613 56 Antisense
AACTTTCATTCGACCACCAGGTGTC 97 139 150 Antisense
GGTGTCCGTATTTGCCTTAAAATCA 709 491 169 Antisense
AAATGCCACTTATCTGGAAGCTCAG 428 119 201 Antisense
CATTCATGTGGGTCGGAGCTCGTCG 490 215 332 Antisense
GAGCTCGTCGGAAGTCGTGGTGTTA 216 385 347 Antisense
GATGGATCATATCTGTTCACTCAAT 651 407 451 Antisense
GGGATAAGACTATTTCTGCTCCAGA 710 495 476 Antisense
CAATGCTCCAGAAGACTGCGTTGTG 272 183 516 Antisense
TGACAAAGATTGCTCACTTCCTCAA 467 571 573 Antisense
Sequence Source Affymetrix Proprietary Database