[Home] | [Total List]

[180408_s_at]

Description B0554.7 /REP_DB=WormBase Gene ID /WP=CE25744 /TR=P91007 /GB=AAB37618.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 29
(-1.6)
A 		39
(-0.8)
A 		11.5
(-3)
A 		84.9
(3)
A 		73
B 69.6
(-0.8)
A 		42.4
(-3)
A 		53.5
(-2.1)
A 		115.6
(3)
P 		73
C 52.7
(-1.7)
A 		40.3
(-3)
A 		52.7
(-1.7)
A 		96.4
(3)
M 		56
avr 50.4
(-1.9) 		40.6
(-2.9) 		39.2
(-3) 		99
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 51.3
(3)
A 		35
(0.8)
A 		7.6
(-2.9)
A 		6.5
(-3)
A 		50.2
(2.9)
A 		7.2
(-2.9)
A 		45
B 23.1
(-2)
A 		71.2
(3)
A 		13.4
(-3)
A 		58.8
(1.7)
A 		30.1
(-1.3)
A 		28.5
(-1.4)
A 		58
C 6.1
(-3)
A 		8.9
(-2.6)
A 		47.1
(3)
A 		12.2
(-2.1)
A 		10.5
(-2.4)
A 		34.9
(1.2)
A 		41
avr 26.8
(-1.4) 		38.4
(3) 		22.7
(-3) 		25.8
(-1.8) 		30.3
(-0.1) 		23.5
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 10.6
(1.9)
A 		8.5
(0.5)
A 		3
(-3)
A 		12.4
(3)
A 		9
B 22.2
(2)
A 		10.5
(-3)
A 		12.4
(-2.2)
A 		24.6
(3)
P 		14
C 17.4
(2.1)
A 		11.6
(-3)
A 		18.4
(3)
A 		16.3
(1.1)
M 		7
avr 16.7
(2.1) 		10.2
(-3) 		11.3
(-2.1) 		17.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.5
(0.5)
A 		12.5
(1.8)
A 		1.7
(-3)
A 		1.7
(-3)
A 		15.1
(3)
A 		1.7
(-3)
A 		13
B 8
(-1.6)
A 		23.7
(3)
A 		3.3
(-3)
A 		15.6
(0.6)
A 		12.2
(-0.4)
A 		10.6
(-0.9)
A 		20
C 2.3
(-3)
A 		2.7
(-2.8)
A 		12
(3)
A 		2.5
(-2.9)
A 		3.4
(-2.3)
A 		11.7
(2.8)
A 		10
avr 6.6
(-2.3) 		13
(3) 		5.7
(-3) 		6.6
(-2.3) 		10.2
(0.7) 		8
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15187
Sequence Type Exemplar sequence
Representative Public ID B0554.7 NCBI
Target Description B0554.7 /REP_DB=WormBase Gene ID /WP=CE25744 /TR=P91007 /GB=AAB37618.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070800 NCBI Caenorhabditis elegans B0554.7 (B0554.7) mRNA, complete cds. 11/11 None
B0554.7 ENSEMBL cdna:known chromosome:CEL140:V:437405:440852:-1 gene:B0554.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032186 7/11 Cross Hyb Matching Probes None
SNAP00000032187 4/11 Cross Hyb Matching Probes None
GENEFINDER00000032189 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:437404-440852(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.7
Entrez Gene 178566 Entrez gene
SwissProt P91007 EMBL-EBI
WormBase CE25744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37618 Hypothetical protein B0554.7 [Caenorhabditis elegans] ref|NP_503201.1| B0554.7 [Caenorhabditis elegans] 0.0
blast CAE58261 Hypothetical protein CBG01362 [Caenorhabditis briggsae] 1.0E-176
blast AAQ91895 Hypothetical protein Y39D8A.1d [Caenorhabditis elegans] ref|NP_001024232.1| Y39D8A.1d [Caenorhabditis elegans] pir||T33784 hypothetical protein Y39D8A.1 - Caenorhabditis elegans 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 5.0E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503201.1 11 54-76,83-105,109-131,144-166,195-217,250-272,282-304,339-358,373-395,415-434,438-460
B0554.7 11 54-76,83-105,109-131,144-166,195-217,250-272,282-304,339-358,373-395,415-434,438-460
Sequence
Target Sequence 
>C. ELEGANS:180408_S_AT
atgacctacattccagcggtatatggccttggtgcaggggttggcgaggttttgagtgag
ttaacttttgaaaattttttgacaacaaaaaatagttacaaagtttcagtgggaatgatt
gtttccgagttgagcaaaagaattcaaggatttggattgaagccgactatggtgatagga
tcggtaatactgacggtttattgtgctctgctccatgcttcaactccaatggaggcacct
atgagaccaacgtcgggggaacccatttggttctatcagtcatatcctctgatcttcctc
attgcattcctcgccggcaccagtgattgttgcttcaatggagtccgatcagtgatctgc
gccctggtgatgccctcccgacgcgcccagtcattctccgtctcgagaatgtaccaggcg
gctgcatgcgtcattatcttcttcttcagcccaactattccactttacatttacacattt
ggtctacctattttggcagtttgctccacaatcgtgtttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCTACATTCCAGCGGTATATG 225 43 862 Antisense
ATGGCCTTGGTGCAGGGGTTGGCGA 257 53 884 Antisense
TACTGACGGTTTATTGTGCTCTGCT 709 645 1049 Antisense
TGAGACCAACGTCGGGGGAACCCAT 445 547 1103 Antisense
GCCGGCACCAGTGATTGTTGCTTCA 608 283 1174 Antisense
GGAGTCCGATCAGTGATCTGCGCCC 63 515 1201 Antisense
GAGAATGTACCAGGCGGCTGCATGC 164 391 1266 Antisense
CAACTATTCCACTTTACATTTACAC 156 189 1313 Antisense
ACATTTACACATTTGGTCTACCTAT 606 105 1328 Antisense
GTCTACCTATTTTGGCAGTTTGCTC 177 469 1343 Antisense
TTTGCTCCACAATCGTGTTTTTCAA 492 667 1361 Antisense
Sequence Source Affymetrix Proprietary Database