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[180406_at]

Description F59D6.7 /REP_DB=WormBase Gene ID /WP=CE11488 /TR=O16343 /GB=AAB65882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 24      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 506
1 2 3 4 range
A 578
(3)
P 		268.2
(-1.3)
P 		191.7
(-2.4)
P 		147.3
(-3)
P 		431
B 532
(3)
P 		215
(-2)
P 		247.9
(-1.4)
P 		148.2
(-3)
P 		384
C 653.5
(3)
P 		188.6
(-3)
P 		237.3
(-2.4)
P 		191.9
(-3)
P 		465
avr 587.8
(3) 		223.9
(-2.1) 		225.6
(-2.1) 		162.5
(-3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 493.4
(3)
P 		360.5
(0.8)
P 		462.5
(2.5)
P 		235.4
(-1.3)
P 		131.5
(-3)
P 		143.1
(-2.8)
P 		362
B 366.2
(2.7)
P 		378.6
(3)
P 		299.3
(1.2)
P 		186.7
(-1.3)
P 		125
(-2.7)
P 		111.4
(-3)
P 		267
C 387.6
(2.8)
P 		397.8
(3)
P 		234
(-0.7)
P 		245.4
(-0.4)
P 		130.1
(-3)
P 		159.6
(-2.3)
P 		268
avr 415.7
(3) 		379
(2.2) 		331.9
(1.2) 		222.5
(-1) 		128.9
(-3) 		138
(-2.8) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 210.5
(3)
P 		58.2
(-1.8)
P 		50.1
(-2.1)
P 		21.6
(-3)
P 		189
B 169.7
(3)
P 		53.1
(-2.1)
P 		57.4
(-1.9)
P 		31.6
(-3)
P 		138
C 216.3
(3)
P 		54.2
(-2.3)
P 		82.7
(-1.4)
P 		32.3
(-3)
P 		184
avr 198.8
(3) 		55.2
(-2.1) 		63.4
(-1.8) 		28.5
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 91
(0.6)
P 		128.2
(3)
P 		100.7
(1.2)
P 		59.7
(-1.4)
P 		39.7
(-2.7)
P 		34.8
(-3)
P 		93
B 127.4
(3)
P 		126
(2.9)
P 		72.7
(-0.8)
P 		49.5
(-2.4)
P 		50.8
(-2.4)
P 		41.5
(-3)
P 		86
C 143.7
(3)
P 		121.4
(1.7)
P 		59.6
(-2)
P 		49.4
(-2.6)
P 		42.1
(-3)
P 		53.4
(-2.3)
P 		102
avr 120.7
(2.7) 		125.2
(3) 		77.7
(-0.5) 		52.9
(-2.3) 		44.2
(-2.9) 		43.2
(-3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15338
Sequence Type Exemplar sequence
Representative Public ID F59D6.7 NCBI
Target Description F59D6.7 /REP_DB=WormBase Gene ID /WP=CE11488 /TR=O16343 /GB=AAB65882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071429 NCBI Caenorhabditis elegans F59D6.7 (F59D6.7) mRNA, complete cds. 11/11 None
SNAP00000018891 ENSEMBL cdna:SNAP chromosome:CEL140:V:3037762:3039160:-1 11/11 None
GENEFINDER00000018894 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3037762:3039160:-1 11/11 None
F59D6.7 ENSEMBL cdna:known chromosome:CEL140:V:3037762:3039160:-1 gene:F59D6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3037761-3039160(-) 97.98 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D6.7
Entrez Gene 186617 Entrez gene
SwissProt O16343 EMBL-EBI
WormBase CE11488 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65882 Hypothetical protein F59D6.7 [Caenorhabditis elegans] ref|NP_503830.1| F59D6.7 [Caenorhabditis elegans] 1.0E-117
blast AAB65882 Hypothetical protein F59D6.7 [Caenorhabditis elegans] ref|NP_503830.1| F59D6.7 [Caenorhabditis elegans] 1.0E-102
blast CAE64754 Hypothetical protein CBG09544 [Caenorhabditis briggsae] 8.0E-89
blast CAA94856 Hypothetical protein ZK856.8 [Caenorhabditis elegans] ref|NP_505623.1| ZK856.8 [Caenorhabditis elegans] 4.0E-88
blast CAE64754 Hypothetical protein CBG09544 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.028
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.7E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.028
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.7E-7
Sequence
Target Sequence 
>C. ELEGANS:180406_AT
aacatcaaattctccgactctatactcgatttgcatcacttgataaaaatggtcaaggat
atttgtcacgtgacgacttcttgaatgtcccagaactagctgtcaatccgcttggagatc
gaattatcgacgcatttttcacattaggcgactctgatggggatagcaaatccgggcaat
tgactttccgacaatttgtgagaattctggcacattttcaaccaatctctaaagtgaagg
ataatgcgctgaattcgaggaaggacaagcttcgatttgccttcaaaatgtatgacctga
acaagaacaactacatcacacgcgaggagttcaaagtgatcctaaacagtatggtaggag
ctaacataacttctgatcaactcgacaaaatcgccgacaaaactctcgaggaagccgacc
aagatcgtgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATCAAATTCTCCGACTCTATAC 505 137 140 Antisense
GACTCTATACTCGATTTGCATCACT 643 373 155 Antisense
GTGACGACTTCTTGAATGTCCCAGA 396 483 209 Antisense
GAACTAGCTGTCAATCCGCTTGGAG 257 349 232 Antisense
GAATTATCGACGCATTTTTCACATT 425 325 260 Antisense
TAGGCGACTCTGATGGGGATAGCAA 370 653 284 Antisense
AGCAAATCCGGGCAATTGACTTTCC 7 21 304 Antisense
TGGCACATTTTCAACCAATCTCTAA 68 547 347 Antisense
GAACAACTACATCACACGCGAGGAG 272 353 444 Antisense
AATCGCCGACAAAACTCTCGAGGAA 499 167 528 Antisense
GGAAGCCGACCAAGATCGTGATGGA 255 531 549 Antisense
Sequence Source Affymetrix Proprietary Database