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[180405_at]

Description K10H10.5 /REP_DB=WormBase Gene ID /WP=CE16255 /TR=O45682 /GB=CAB05781.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 27
(-1.7)
A 		4.4
(-3)
A 		3.6
(-3)
A 		109.2
(3)
A 		106
B 17
(-2.3)
A 		15
(-2.5)
A 		9.8
(-3)
A 		75
(3)
A 		65
C 4.4
(-2.9)
A 		3.3
(-3)
A 		19.3
(-2.1)
A 		107.4
(3)
M 		104
avr 16.1
(-2.4) 		7.6
(-3) 		10.9
(-2.8) 		97.2
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 3.2
(-3)
A 		5.6
(-2.8)
A 		45.9
(0.6)
A 		56.3
(1.4)
A 		75.3
(3)
A 		64.8
(2.1)
A 		72
B 6.3
(-3)
A 		10.6
(-2.8)
A 		48
(-1)
A 		30.4
(-1.8)
A 		131.1
(3)
P 		59
(-0.5)
A 		125
C 2.4
(-3)
A 		18
(-1.8)
A 		10.1
(-2.4)
A 		51
(0.8)
A 		78.2
(3)
P 		68
(2.2)
P 		76
avr 4
(-3) 		11.4
(-2.5) 		34.7
(-1) 		45.9
(-0.2) 		94.9
(3) 		63.9
(1) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.8
(0.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		16
(3)
A 		15
B 5.4
(-1.6)
A 		3.7
(-2.4)
A 		2.3
(-3)
A 		16
(3)
A 		14
C 1.5
(-2.8)
A 		1
(-3)
A 		6.7
(-1)
A 		18.1
(3)
M 		17
avr 5.6
(-1.5) 		1.9
(-3) 		3.3
(-2.4) 		16.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2
(-2.6)
A 		10
(-0.4)
A 		14.3
(0.7)
A 		22.7
(3)
A 		15.8
(1.1)
A 		22
B 2.2
(-3)
A 		3.5
(-2.8)
A 		11.7
(-1.9)
A 		8.1
(-2.3)
A 		53.3
(3)
P 		22
(-0.7)
A 		51
C 0.9
(-3)
A 		5.5
(-1.9)
A 		2.6
(-2.6)
A 		10.3
(-0.7)
A 		25.3
(3)
P 		22.7
(2.4)
P 		24
avr 1.2
(-3) 		3.7
(-2.5) 		8.1
(-1.7) 		10.9
(-1.2) 		33.8
(3) 		20.2
(0.5) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2898
Sequence Type Exemplar sequence
Representative Public ID K10H10.5 NCBI
Target Description K10H10.5 /REP_DB=WormBase Gene ID /WP=CE16255 /TR=O45682 /GB=CAB05781.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064610 NCBI Caenorhabditis elegans K10H10.5 (K10H10.5) mRNA, complete cds. 11/11 None
SNAP00000031897 ENSEMBL cdna:SNAP chromosome:CEL140:II:14500383:14502434:1 9/11 None
GENEFINDER00000031904 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14501641:14502434:1 11/11 None
K10H10.5 ENSEMBL cdna:known chromosome:CEL140:II:14501770:14502434:1 gene:K10H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14501766-14502431(+) 94.44 100.0
Public Domain and Genome References
Gene Title
Ensembl K10H10.5
Entrez Gene 187284 Entrez gene
SwissProt O45682 EMBL-EBI
WormBase CE16255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05781 Hypothetical protein K10H10.5 [Caenorhabditis elegans] ref|NP_497011.1| K10H10.5 [Caenorhabditis elegans] 2.0E-60
blast CAB05781 Hypothetical protein K10H10.5 [Caenorhabditis elegans] ref|NP_497011.1| K10H10.5 [Caenorhabditis elegans] 3.0E-60
blast CAB05781 Hypothetical protein K10H10.5 [Caenorhabditis elegans] ref|NP_497011.1| K10H10.5 [Caenorhabditis elegans] 4.0E-44
blast CAB05780 Hypothetical protein K10H10.4 [Caenorhabditis elegans] ref|NP_497010.1| K10H10.4 [Caenorhabditis elegans] 5.0E-42
blast CAE57923 Hypothetical protein CBG00976 [Caenorhabditis briggsae] 3.0E-28
blast CAE57923 Hypothetical protein CBG00976 [Caenorhabditis briggsae] 4.0E-28
blast CAE57924 Hypothetical protein CBG00977 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031897 1 7-26
GENEFINDER00000031904 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180405_AT
gatatgcctgtaaccatccaaacatctatcaatcctgcaattgtcaaagtttttgccaac
cttacacacatcctcatgaaatgtattatcaccacggctacggctgtaatggacattgtt
tagatcatcaagagagtatgtgtgaagaggatgatgaatgtggtatgaaaaaaagaaaga
aacaccgaaaaaagaacaagaagaagaaaaataagaagaaattcaggttttcagacgagg
aggacgatgaggagaaggtagcccatcataagaaaaaacctatagaagaagacgatgatg
aatttccattacctccaaactcggaagaagtggcagaagcatcgaaaagttcgaaaaagg
aagaagactgggaagacgatgacaagtgggaacggaagttcgtgagccagacaacaactc
ctgctcccaggcaggcggccagtggtggaggtcttggaggcctagggttgggaaatggag
gactatttggaattagcagtggtgtgggagttggaataccgggagtcggaccgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGCCTGTAACCATCCAAACAT 492 425 20 Antisense
ATCCAAACATCTATCAATCCTGCAA 209 41 35 Antisense
AACCTTACACACATCCTCATGAAAT 463 147 77 Antisense
GAAATGTATTATCACCACGGCTACG 674 361 97 Antisense
CACGGCTACGGCTGTAATGGACATT 136 197 112 Antisense
GAGGAGAAGGTAGCCCATCATAAGA 124 405 268 Antisense
TGATGAATTTCCATTACCTCCAAAC 639 565 315 Antisense
GGAAGTTCGTGAGCCAGACAACAAC 38 533 413 Antisense
CCAGGCAGGCGGCCAGTGGTGGAGG 347 271 446 Antisense
GTGGAGGTCTTGGAGGCCTAGGGTT 605 489 464 Antisense
TGGAATACCGGGAGTCGGACCGATT 618 545 531 Antisense
Sequence Source Affymetrix Proprietary Database