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[180404_at]

Description C09H10.7 /REP_DB=WormBase Gene ID /WP=CE02136 /TR=Q17883 /GB=CAA90438.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 11.3
(3)
A 		3.7
(-2.4)
A 		4.8
(-1.6)
A 		2.8
(-3)
A 		9
B 26.5
(3)
A 		11.1
(-1.2)
A 		9.3
(-1.7)
A 		4.4
(-3)
A 		22
C 12.7
(3)
A 		5.7
(-2)
A 		8.8
(0.2)
A 		4.3
(-3)
A 		8
avr 16.8
(3) 		6.8
(-1.6) 		7.6
(-1.2) 		3.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		8.9
(1.8)
A 		4
(-1.7)
A 		10.6
(3)
A 		2.2
(-3)
A 		7.9
(1.1)
A 		8
B 3.9
(3)
A 		2.3
(-3)
A 		2.8
(-1.1)
A 		3.9
(3)
A 		2.7
(-1.5)
A 		3.8
(2.6)
A 		2
C 5.7
(1.7)
A 		2.4
(-3)
A 		6.5
(2.9)
A 		3.2
(-1.9)
A 		5.5
(1.4)
A 		6.6
(3)
A 		4
avr 4.1
(-1.6) 		4.5
(-0.7) 		4.4
(-0.9) 		5.9
(2.5) 		3.5
(-3) 		6.1
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.1
(3)
A 		0.8
(-2.4)
A 		1.2
(-1.7)
A 		0.4
(-3)
A 		4
B 8.5
(3)
A 		2.7
(-1.6)
A 		2.1
(-2.1)
A 		0.9
(-3)
A 		8
C 4.2
(3)
A 		1.6
(-1.5)
A 		3.1
(1.1)
A 		0.7
(-3)
A 		4
avr 5.6
(3) 		1.7
(-1.8) 		2.1
(-1.3) 		0.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.2
(3)
A 		0.9
(-2.1)
A 		2.7
(1.9)
A 		0.7
(-2.6)
A 		1.9
(0.1)
A 		3
B 1.4
(3)
A 		0.8
(-2.1)
A 		0.7
(-3)
A 		1
(-0.4)
A 		1.1
(0.4)
A 		1.4
(3)
A 		1
C 2.1
(2.6)
A 		0.7
(-2.6)
A 		1.7
(1.1)
A 		0.6
(-3)
A 		1.8
(1.5)
A 		2.2
(3)
A 		2
avr 1.3
(-1.3) 		1.6
(1.3) 		1.1
(-3) 		1.4
(-0.4) 		1.2
(-2.1) 		1.8
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3951
Sequence Type Exemplar sequence
Representative Public ID C09H10.7 NCBI
Target Description C09H10.7 /REP_DB=WormBase Gene ID /WP=CE02136 /TR=Q17883 /GB=CAA90438.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063980 NCBI Caenorhabditis elegans C09H10.7 (C09H10.7) mRNA, complete cds. 11/11 None
SNAP00000010334 ENSEMBL cdna:SNAP chromosome:CEL140:II:11108137:11110962:1 11/11 None
GENEFINDER00000010339 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11108101:11109523:1 11/11 None
C09H10.7 ENSEMBL cdna:known chromosome:CEL140:II:11108137:11109496:1 gene:C09H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11108133-11109493(+) 98.36 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H10.7
Entrez Gene 182479 Entrez gene
SwissProt Q17883 EMBL-EBI
WormBase CE02136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90438 Hypothetical protein C09H10.7 [Caenorhabditis elegans] ref|NP_496381.1| C09H10.7 [Caenorhabditis elegans] 0.0
blast CAE59567 Hypothetical protein CBG02964 [Caenorhabditis briggsae] 1.0E-136
blast CAE59567 Hypothetical protein CBG02964 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:180404_AT
ttttaagcttcgcaacgtgttctcctgctcgacaagtcttctggtcgaacggttctacga
ttcatccagcgaacaaaccttccaccatcacgacacatttcacctctactcgctatccgg
tccattcggcgagcttctcccggttatctacaagacaagcggctaccatccacaatggaa
attctgttggcaatcgcatcgagacgaggctggactcgttgacgctcagcaaaattacgt
tgttgtctatgatcagaaggagaagacgcatcggatttatatggcacgagagacacaaga
acaggaagttcacgcagcgattcgatacgttgaagcactcagaagaccgtctgattcaac
aatgttcgcgtcgagtttggcgccgaattctgccggcagaactacgcattttgatccgac
actcaactctcccgccgaaaatgtgctctccgaagtgatcagctcggaaattgatagccg
ctcaccgttcactcctcatctgcgatccggttttggacattctactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTAAGCTTCGCAACGTGTTCTCC 618 673 390 Antisense
TCCTGCTCGACAAGTCTTCTGGTCG 441 593 412 Antisense
GGTCGAACGGTTCTACGATTCATCC 38 503 432 Antisense
GATTCATCCAGCGAACAAACCTTCC 625 429 448 Antisense
CTTCTCCCGGTTATCTACAAGACAA 691 219 523 Antisense
GCTGGACTCGTTGACGCTCAGCAAA 108 295 598 Antisense
GTTCACGCAGCGATTCGATACGTTG 344 445 697 Antisense
CAATGTTCGCGTCGAGTTTGGCGCC 337 183 749 Antisense
TTGGCGCCGAATTCTGCCGGCAGAA 459 709 766 Antisense
GAACTACGCATTTTGATCCGACACT 11 349 788 Antisense
GATCCGGTTTTGGACATTCTACTCC 191 417 893 Antisense
Sequence Source Affymetrix Proprietary Database