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[180403_at]

Description M03E7.3 /REP_DB=WormBase Gene ID /WP=CE07396 /TR=Q21497 /GB=AAB00724.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.2
(-3)
A 		4.4
(3)
A 		2.8
(-1.4)
A 		2.5
(-2.2)
A 		2
B 1.6
(-3)
A 		3.1
(-0.2)
A 		3.4
(0.4)
A 		4.8
(3)
A 		3
C 3.7
(-2.6)
A 		2.3
(-3)
A 		2.3
(-3)
A 		25.5
(3)
A 		23
avr 2.5
(-3) 		3.3
(-2.4) 		2.8
(-2.8) 		10.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.1
(-1.9)
A 		1.8
(-3)
A 		4.1
(-1.9)
A 		9.1
(0.4)
A 		14.5
(3)
A 		3.6
(-2.1)
A 		13
B 1.4
(-3)
A 		3.9
(-1.5)
A 		5.6
(-0.5)
A 		3.2
(-1.9)
A 		7.2
(0.4)
A 		11.5
(3)
A 		10
C 2
(-2.8)
A 		1.9
(-3)
A 		5.5
(3)
A 		2.3
(-2.3)
A 		2.5
(-2)
A 		3.4
(-0.5)
A 		4
avr 2.5
(-3) 		2.5
(-3) 		5.1
(-0.2) 		4.9
(-0.4) 		8.1
(3) 		6.2
(1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.8
(1)
A 		1
(3)
A 		0.7
(-0)
A 		0.4
(-3)
A 		1
B 0.5
(-3)
A 		0.8
(0.6)
A 		0.8
(0.6)
A 		1
(3)
A 		1
C 1.2
(-2.2)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		4.3
(3)
A 		4
avr 0.8
(-3) 		0.8
(-3) 		0.8
(-3) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		2.3
(-0.3)
A 		4.4
(3)
A 		0.9
(-2.5)
A 		4
B 0.5
(-3)
A 		1.3
(-1.7)
A 		1.4
(-1.6)
A 		0.8
(-2.5)
A 		2.9
(0.8)
A 		4.3
(3)
A 		4
C 0.7
(-1.7)
A 		0.6
(-2.3)
A 		1.4
(3)
A 		0.5
(-3)
A 		0.8
(-1)
A 		1.1
(1)
A 		1
avr 0.7
(-3) 		0.8
(-2.7) 		1.2
(-1.5) 		1.2
(-1.5) 		2.7
(3) 		2.1
(1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12209
Sequence Type Exemplar sequence
Representative Public ID M03E7.3 NCBI
Target Description M03E7.3 /REP_DB=WormBase Gene ID /WP=CE07396 /TR=Q21497 /GB=AAB00724.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072081 NCBI Caenorhabditis elegans M03E7.3 (M03E7.3) mRNA, complete cds. 11/11 None
M03E7.3 ENSEMBL cdna:known chromosome:CEL140:V:5617481:5618776:1 gene:M03E7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029715 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5617480-5618776(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03E7.3
Entrez Gene 187423 Entrez gene
SwissProt Q21497 EMBL-EBI
WormBase CE07396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00724 Hypothetical protein M03E7.3 [Caenorhabditis elegans] ref|NP_504482.1| M03E7.3 [Caenorhabditis elegans] 2.0E-60
blast CAE64602 Hypothetical protein CBG09358 [Caenorhabditis briggsae] 2.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504482.1 1 60-82
M03E7.3 1 60-82
Sequence
Target Sequence 
>C. ELEGANS:180403_AT
atgcatttcgttggcgatgctactctttacattgaaaatgaacattttcatattaaaatg
gcaaaacagttgtatcgatcaattttattttcatttctagcaaaaatgtattctgacgtt
aatttcgatgaaaacccactgtgtgaatcctgcaaggcagataaagttcaacgaaaaccc
tcaaactttggctttctcgccatgtattgtctatggtggttcggtggattcggactgctt
gtggtagatgacaaatcccaattggaaatgccaccggtagatgcagccgaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATTTCGTTGGCGATGCTACTC 462 43 13 Antisense
TGGCGATGCTACTCTTTACATTGAA 272 545 24 Antisense
ATGTATTCTGACGTTAATTTCGATG 2 49 118 Antisense
AATTTCGATGAAAACCCACTGTGTG 395 175 133 Antisense
CCCACTGTGTGAATCCTGCAAGGCA 383 257 147 Antisense
CCCTCAAACTTTGGCTTTCTCGCCA 3 261 190 Antisense
TGGCTTTCTCGCCATGTATTGTCTA 476 545 201 Antisense
TTGTCTATGGTGGTTCGGTGGATTC 693 705 219 Antisense
GGATTCGGACTGCTTGTGGTAGATG 95 509 238 Antisense
AATCCCAATTGGAAATGCCACCGGT 312 123 266 Antisense
GCCACCGGTAGATGCAGCCGAAGTG 23 279 282 Antisense
Sequence Source Affymetrix Proprietary Database