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[180400_at]

Description ZK381.6 /REP_DB=WormBase Gene ID /WP=CE07630 /TR=Q9GYF5 /GB=AAG00056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      6grp_total > 28      4grp_total > 19      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 45.6
(-0.1)
P 		33
(-1)
A 		4.4
(-3)
A 		88.8
(3)
P 		84
B 38.7
(-2.7)
P 		65.7
(0.5)
P 		35.9
(-3)
A 		87.3
(3)
P 		51
C 39.9
(-2.6)
P 		62.5
(-1)
P 		33.8
(-3)
M 		121.3
(3)
P 		88
avr 41.4
(-1.7) 		53.7
(-0.7) 		24.7
(-3) 		99.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 64.6
(3)
P 		24.2
(-3)
A 		39.4
(-0.7)
P 		44.1
(-0)
A 		36.8
(-1.1)
A 		48.8
(0.7)
A 		40
B 37.9
(-0.6)
P 		57
(3)
P 		29.8
(-2.2)
P 		34.5
(-1.3)
M 		38
(-0.6)
P 		25.6
(-3)
P 		31
C 68.5
(3)
M 		46
(0.3)
P 		17.7
(-3)
A 		36.2
(-0.8)
P 		35.7
(-0.9)
A 		51.4
(1)
P 		51
avr 57
(3) 		42.4
(-0.1) 		29
(-3) 		38.3
(-1) 		36.8
(-1.3) 		41.9
(-0.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.6
(3)
P 		7.2
(-0.6)
A 		1.1
(-3)
A 		13
(1.6)
P 		16
B 12.4
(-0.6)
P 		16.2
(1.6)
P 		8.3
(-3)
A 		18.6
(3)
P 		10
C 13.2
(-2)
P 		18
(1.3)
P 		11.8
(-3)
M 		20.4
(3)
P 		9
avr 14.1
(1.1) 		13.8
(0.9) 		7.1
(-3) 		17.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.9
(3)
P 		8.6
(-3)
A 		8.6
(-3)
P 		11.2
(1.7)
A 		11.1
(1.5)
A 		11.9
(3)
A 		3
B 13.2
(0.1)
P 		19
(3)
P 		7.2
(-3)
P 		9.1
(-2)
M 		15.5
(1.2)
P 		9.5
(-1.8)
P 		12
C 25.4
(3)
M 		14
(-0.3)
P 		4.5
(-3)
A 		7.3
(-2.2)
P 		11.6
(-1)
A 		17.2
(0.6)
P 		21
avr 16.8
(3) 		13.9
(1.3) 		6.8
(-3) 		9.2
(-1.6) 		12.7
(0.5) 		12.9
(0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9433
Sequence Type Exemplar sequence
Representative Public ID ZK381.6 NCBI
Target Description ZK381.6 /REP_DB=WormBase Gene ID /WP=CE07630 /TR=Q9GYF5 /GB=AAG00056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171372, NM_171373
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171373 NCBI Caenorhabditis elegans ZK381.5b (ZK381.5) mRNA, complete cds. A 
GENEFINDER00000022649 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6979012:6986919:-1 None
ZK381.5b ENSEMBL cdna:known chromosome:CEL140:IV:6978759:6983733:-1 gene:ZK381.5 A 
ZK381.5a ENSEMBL cdna:known chromosome:CEL140:IV:6979012:6986919:-1 gene:ZK381.5 A 
NM_171372 NCBI Caenorhabditis elegans ZK381.5a (ZK381.5) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6982897-6983560(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK381.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97990 Hypothetical protein ZK381.5b [Caenorhabditis elegans] ref|NP_741436.1| ZK381.5b [Caenorhabditis elegans] 0.0
blast AAM97989 Hypothetical protein ZK381.5a [Caenorhabditis elegans] ref|NP_741435.1| ZK381.5a [Caenorhabditis elegans] 0.0
blast CAE61783 Hypothetical protein CBG05744 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-8
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.6E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-8
Pfam IPR010442 EMBL-EBI PET 5.1E-52
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.3E-13
Sequence
Target Sequence 
>C. ELEGANS:180400_AT
aattttcagtgtccaaaacgtcttgaagaaggagaaatcagtgtgatggctgcaagaact
ggaaaaagatatcatccatcgtgttttcggtgtcaaacgtgtgatgttctacttgttgat
ttgatttattttgcacacgacaatcaggttaggaattttttaaaaagtaatttttactat
cagaaattgaattttttggaagatatagacaatgtgtcaatggtcaatacatatagtcaa
ttttatataatcaacaacaacccaaacatttttagatttgtcaaaaatgttcgactcatc
atctctacaaaaaaaattttgggatgtcttacgatgttatttgatcattctattttgaga
ccatctactgtggaagacaccatgctgaacaggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTCAGTGTCCAAAACGTCTTG 458 173 115 Antisense
GTGTGATGGCTGCAAGAACTGGAAA 607 487 155 Antisense
ATCATCCATCGTGTTTTCGGTGTCA 102 31 185 Antisense
ACGTGTGATGTTCTACTTGTTGATT 704 93 211 Antisense
GATTTGATTTATTTTGCACACGACA 468 427 232 Antisense
TGCACACGACAATCAGGTTAGGAAT 114 563 246 Antisense
AATGTTCGACTCATCATCTCTACAA 57 165 400 Antisense
TTGGGATGTCTTACGATGTTATTTG 402 705 433 Antisense
GATCATTCTATTTTGAGACCATCTA 146 421 457 Antisense
GAGACCATCTACTGTGGAAGACACC 635 393 471 Antisense
GGAAGACACCATGCTGAACAGGTCA 361 531 486 Antisense
Sequence Source Affymetrix Proprietary Database