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[180398_s_at]

Description F15E6.4 /REP_DB=WormBase Gene ID /WP=CE16993 /TR=O44495 /GB=AAB92056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      6grp_total > 77      4grp_total > 52      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 49.1
(-0.1)
P 		72.3
(3)
P 		27.9
(-3)
P 		41.6
(-1.1)
A 		44
B 50.2
(-2)
A 		52.1
(-1.7)
A 		79.4
(3)
P 		44.5
(-3)
A 		35
C 58.1
(3)
P 		40.4
(0.3)
A 		33.6
(-0.8)
A 		19.1
(-3)
A 		39
avr 52.5
(2.3) 		54.9
(3) 		47
(0.6) 		35.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 73.4
(-2.6)
P 		41.2
(-3)
A 		106.9
(-2.2)
P 		153.7
(-1.6)
P 		79.8
(-2.5)
P 		528.4
(3)
P 		487
B 54.2
(-2.9)
A 		46.6
(-3)
P 		55.7
(-2.8)
P 		115.4
(-1.9)
P 		188.3
(-0.6)
P 		405.7
(3)
P 		359
C 55.3
(-2.8)
P 		41.8
(-3)
P 		62.3
(-2.8)
P 		88.6
(-2.5)
P 		156
(-1.7)
P 		560
(3)
P 		518
avr 61
(-2.8) 		43.2
(-3) 		75
(-2.6) 		119.2
(-2) 		141.4
(-1.7) 		498
(3) 		455
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.9
(3)
P 		15.7
(1.9)
P 		7.3
(-2.4)
P 		6.1
(-3)
A 		12
B 16
(1.4)
A 		12.9
(-0.7)
A 		18.4
(3)
P 		9.5
(-3)
A 		9
C 19.2
(3)
P 		11.6
(0.1)
A 		11.7
(0.2)
A 		3.2
(-3)
A 		16
avr 17.7
(3) 		13.4
(0.7) 		12.5
(0.3) 		6.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 13.5
(-3)
P 		14.6
(-2.9)
A 		23.3
(-2.5)
P 		39
(-1.7)
P 		24.1
(-2.4)
P 		128.7
(3)
P 		115
B 18.9
(-2.8)
A 		15.5
(-2.9)
P 		13.5
(-3)
P 		30.6
(-2.3)
P 		76.5
(-0.3)
P 		151.3
(3)
P 		138
C 20.5
(-2.7)
P 		12.7
(-3)
P 		15.9
(-2.9)
P 		17.8
(-2.8)
P 		50.5
(-1.7)
P 		187.5
(3)
P 		175
avr 17.6
(-2.9) 		14.3
(-3) 		17.6
(-2.9) 		29.1
(-2.4) 		50.4
(-1.5) 		155.8
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180398_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10536
Sequence Type Exemplar sequence
Representative Public ID F15E6.4 NCBI
Target Description F15E6.4 /REP_DB=WormBase Gene ID /WP=CE16993 /TR=O44495 /GB=AAB92056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068134 NCBI Caenorhabditis elegans F15E6.4 (F15E6.4) mRNA, complete cds. 11/11 None
SNAP00000035364 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4291482:4291808:1 11/11 None
GENEFINDER00000035379 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4291482:4291808:1 11/11 None
F15E6.4 ENSEMBL cdna:known chromosome:CEL140:IV:4291482:4292102:1 gene:F15E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4291487-4291814(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.4
Entrez Gene 177193 Entrez gene
SwissProt O44495 EMBL-EBI
WormBase CE16993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500535 F15E6.4 [Caenorhabditis elegans] gb|AAB92056.1| Hypothetical protein F15E6.4 [Caenorhabditis elegans] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500535.1 1 7-29
F15E6.4 1 7-29
SNAP00000035364 1 7-29
GENEFINDER00000035379 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180398_S_AT
tgcaattgccactgcccaaattggagtcaacacaggattgggcgtcgggccagctagagc
cggagcaaacttgaacggaggcggctatggaaacggttatggaaatcagggagcttatgg
gaacgccggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATTGCCACTGCCCAAATTGGA 182 577 57 Antisense
AATTGCCACTGCCCAAATTGGAGTC 108 179 60 Antisense
GCCACTGCCCAAATTGGAGTCAACA 514 277 64 Antisense
GGAGTCAACACAGGATTGGGCGTCG 600 517 79 Antisense
CAACACAGGATTGGGCGTCGGGCCA 386 189 84 Antisense
GGCCAGCTAGAGCCGGAGCAAACTT 531 543 104 Antisense
CAGCTAGAGCCGGAGCAAACTTGAA 478 203 107 Antisense
CGGAGGCGGCTATGGAAACGGTTAT 553 201 132 Antisense
AGGCGGCTATGGAAACGGTTATGGA 347 1 135 Antisense
AACGGTTATGGAAATCAGGGAGCTT 410 141 148 Antisense
CAGGGAGCTTATGGGAACGCCGGAC 553 203 163 Antisense
Sequence Source Affymetrix Proprietary Database