[Home] | [Total List]

[180394_s_at]

Description T16G12.5 /REP_DB=WormBase Gene ID /WP=CE23986 /TR=Q22528 /GB=CAA82968.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 92      6grp_total > 79      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 328.6
(3)
P 		176.8
(-3)
P 		264.4
(0.5)
P 		185.3
(-2.7)
P 		152
B 288.1
(3)
P 		192
(-3)
P 		226.3
(-0.9)
P 		196.2
(-2.7)
P 		96
C 260.4
(0.7)
P 		234.3
(-0.9)
P 		298.2
(3)
P 		199
(-3)
P 		99
avr 292.4
(3) 		201
(-2.5) 		263
(1.2) 		193.5
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 256.2
(-1.9)
P 		289.2
(-0.8)
P 		225.3
(-3)
P 		291.1
(-0.7)
P 		258
(-1.9)
P 		399.1
(3)
P 		174
B 244.4
(-2.7)
P 		340.4
(1.4)
P 		237
(-3)
P 		249.3
(-2.5)
P 		305.3
(-0.1)
P 		378.3
(3)
P 		141
C 295.6
(-1.4)
P 		281.7
(-1.9)
P 		256.5
(-3)
P 		272.4
(-2.3)
P 		321.7
(-0.3)
P 		398.8
(3)
P 		142
avr 265.4
(-2) 		303.8
(-0.5) 		239.6
(-3) 		270.9
(-1.8) 		295
(-0.8) 		392.1
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 119.6
(3)
P 		38.4
(-2.3)
P 		69.1
(-0.3)
P 		27.1
(-3)
P 		93
B 91.9
(3)
P 		47.4
(-2.3)
P 		52.4
(-1.7)
P 		41.8
(-3)
P 		50
C 86.2
(1.5)
P 		67.3
(-0.1)
P 		103.9
(3)
P 		33.6
(-3)
P 		70
avr 99.2
(3) 		51
(-1.4) 		75.1
(0.8) 		34.2
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 47.2
(-3)
P 		102.9
(3)
P 		49.1
(-2.8)
P 		73.8
(-0.1)
P 		77.9
(0.3)
P 		97.2
(2.4)
P 		56
B 85
(-1)
P 		113.3
(1)
P 		57.6
(-3)
P 		66
(-2.4)
P 		124
(1.8)
P 		141.1
(3)
P 		84
C 109.6
(1.2)
P 		86
(-0.6)
P 		65.3
(-2.2)
P 		54.8
(-3)
P 		104.1
(0.8)
P 		133.5
(3)
P 		79
avr 80.6
(-0.9) 		100.7
(0.9) 		57.3
(-3) 		64.9
(-2.3) 		102
(1) 		123.9
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180394_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7087
Sequence Type Exemplar sequence
Representative Public ID T16G12.5 NCBI
Target Description T16G12.5 /REP_DB=WormBase Gene ID /WP=CE23986 /TR=Q22528 /GB=CAA82968.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066833 NCBI Caenorhabditis elegans T16G12.5 (T16G12.5) mRNA, complete cds. 11/11 None
SNAP00000010171 ENSEMBL cdna:SNAP chromosome:CEL140:III:10064311:10068771:1 11/11 None
GENEFINDER00000010181 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10064311:10068771:1 11/11 None
T16G12.5 ENSEMBL cdna:known chromosome:CEL140:III:10063172:10069069:1 gene:T16G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10063167-10068767(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G12.5
Entrez Gene 176419 Entrez gene
SwissProt Q22528 EMBL-EBI
WormBase CE23986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82968 Hypothetical protein T16G12.5 [Caenorhabditis elegans] ref|NP_499234.1| T16G12.5 [Caenorhabditis elegans] 0.0
blast CAE65053 Hypothetical protein CBG09896 [Caenorhabditis briggsae] 0.0
blast XP_395107 PREDICTED: hypothetical protein XP_395107, partial [Apis mellifera] 3.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499234.1 3 66-88,103-125,159-181
T16G12.5 3 66-88,103-125,159-181
Sequence
Target Sequence 
>C. ELEGANS:180394_S_AT
gaaaacttttgctcgcacgtggagagatttctgtcacctatttcgatcgactcgccacac
ttttcatgaaaggaatcgatgaaccagaagagattcttcgtgccagcagttgtggagctt
ttggaaatcttatgattgctactcgtggacgaggatccgagaaatggttgggacaggtgt
tccataaaattgtcaatattattcgagtcgatcgatcgccacttgttagacgttcggctg
ctgatctcattcgtcatagcttacaatcaactggtagagatatgctggctattctccgag
aacatcttctcgatcttcaccgcgaaattcgtcaacttcatcgaacggatcgtgatgaga
ctgtccgtttacacgctcaattatgtctcgaagaaattgaagcagcactgcgtcaaaatc
aaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTTTTGCTCGCACGTGGAGA 172 355 2978 Antisense
GAGAGATTTCTGTCACCTATTTCGA 623 395 2999 Antisense
AGAGATTCTTCGTGCCAGCAGTTGT 350 69 3066 Antisense
TCTTATGATTGCTACTCGTGGACGA 386 615 3105 Antisense
GTCGATCGATCGCCACTTGTTAGAC 577 473 3184 Antisense
CTTGTTAGACGTTCGGCTGCTGATC 142 217 3199 Antisense
CTGCTGATCTCATTCGTCATAGCTT 250 237 3215 Antisense
ACCGCGAAATTCGTCAACTTCATCG 357 87 3296 Antisense
GTGATGAGACTGTCCGTTTACACGC 3 485 3329 Antisense
GTTTACACGCTCAATTATGTCTCGA 532 449 3344 Antisense
AAGCAGCACTGCGTCAAAATCAAGA 43 151 3377 Antisense
Sequence Source Affymetrix Proprietary Database