[Home] | [Total List]

[180393_at]

Description C09H10.9 /REP_DB=WormBase Gene ID /WP=CE03008 /TR=Q17885 /GB=CAA90440.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 17.6
(-1)
A 		35.9
(3)
A 		8.4
(-3)
A 		8.8
(-2.9)
A 		28
B 5.5
(-2.7)
A 		13.6
(3)
A 		10.4
(0.7)
A 		5.1
(-3)
A 		9
C 6.8
(-2.5)
A 		6.5
(-2.6)
A 		2.8
(-3)
A 		54.7
(3)
A 		52
avr 10
(-1.9) 		18.7
(1.4) 		7.2
(-3) 		22.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 11
(-2.7)
A 		3.1
(-3)
A 		13.6
(-2.5)
A 		13.8
(-2.5)
A 		59.9
(-0.6)
A 		142.6
(3)
A 		140
B 8.8
(-2.9)
A 		7.1
(-3)
A 		13.3
(-2.6)
A 		8.3
(-2.9)
A 		110.8
(3)
A 		104.8
(2.7)
A 		104
C 4.6
(-3)
A 		6.6
(-2.9)
A 		5.5
(-2.9)
A 		14.5
(-2.4)
A 		62.1
(0.4)
A 		106.8
(3)
A 		102
avr 8.1
(-2.9) 		5.6
(-3) 		10.8
(-2.7) 		12.2
(-2.6) 		77.6
(0.8) 		118.1
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.4
(1.7)
A 		7.8
(3)
A 		2.2
(-2.2)
A 		1.3
(-3)
A 		7
B 1.8
(-1.2)
A 		3.4
(3)
A 		2.4
(0.4)
A 		1.1
(-3)
A 		2
C 2.2
(-2.1)
A 		1.9
(-2.3)
A 		1
(-3)
A 		9.2
(3)
A 		8
avr 3.5
(0.8) 		4.4
(3) 		1.9
(-3) 		3.9
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 2
(-2.8)
A 		1.1
(-3)
A 		3
(-2.7)
A 		3.5
(-2.6)
A 		18.1
(0)
A 		34.7
(3)
A 		34
B 3.1
(-2.9)
A 		2.4
(-3)
A 		3.2
(-2.9)
A 		2.2
(-3)
A 		45
(3)
A 		39.1
(2.2)
A 		43
C 1.7
(-2.9)
A 		2
(-2.9)
A 		1.4
(-3)
A 		2.9
(-2.7)
A 		20.1
(0.3)
A 		35.8
(3)
A 		34
avr 2.3
(-2.9) 		1.8
(-3) 		2.5
(-2.9) 		2.9
(-2.8) 		27.7
(1.5) 		36.5
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3893
Sequence Type Exemplar sequence
Representative Public ID C09H10.9 NCBI
Target Description C09H10.9 /REP_DB=WormBase Gene ID /WP=CE03008 /TR=Q17885 /GB=CAA90440.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063978 NCBI Caenorhabditis elegans C09H10.9 (C09H10.9) mRNA, complete cds. 11/11 None
SNAP00000010332 ENSEMBL cdna:SNAP chromosome:CEL140:II:11104431:11105642:1 9/11 None
GENEFINDER00000010340 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11104431:11107855:1 11/11 None
C09H10.9 ENSEMBL cdna:known chromosome:CEL140:II:11104431:11105819:1 gene:C09H10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11104427-11105816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H10.9
Entrez Gene 182481 Entrez gene
SwissProt Q17885 EMBL-EBI
WormBase CE03008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90440 Hypothetical protein C09H10.9 [Caenorhabditis elegans] ref|NP_496379.1| C09H10.9 [Caenorhabditis elegans] 0.0
blast CAA90441 Hypothetical protein C09H10.6 [Caenorhabditis elegans] ref|NP_496380.1| C09H10.6 [Caenorhabditis elegans] 1.0E-157
blast CAE59569 Hypothetical protein CBG02966 [Caenorhabditis briggsae] 3.0E-75
blast CAE59570 Hypothetical protein CBG02967 [Caenorhabditis briggsae] 7.0E-51
blast CAE59570 Hypothetical protein CBG02967 [Caenorhabditis briggsae] 9.0E-51
blast CAB61110 Hypothetical protein Y53F4B.36 [Caenorhabditis elegans] ref|NP_497122.2| Y53F4B.36 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180393_AT
gatggctgttcggcatccattatttcaatcggaaagtcgccttgtcttcatcatgatgag
ctgtgttcgaacagtttcgattattttcgatagaaatcaggacacgctaactctattcga
cgcacaccagcattactggccagataataaaaaaacttataagcacggcgctctcattgg
tacttgtagctacagtaacttgcactcatttgcaaaatggatagaaaattttgtgtatcc
ggatgtcgccgaccatgttaatgcatttgaaatttcgctgataagaattacggaagccgg
cactaacaaagctcaaggtgtatgtaaatatccggataataaattcacaacgatccgaac
gccagttttccaggctatgaatttgcaggaggacaaagaaaatctgaaattgtcggacca
tccagttctcctcggcattctctccaaacccccaatcgtaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGTTCGGCATCCATTATTT 88 407 555 Antisense
AATCGGAAAGTCGCCTTGTCTTCAT 432 169 581 Antisense
CAGGACACGCTAACTCTATTCGACG 679 207 652 Antisense
ACGCACACCAGCATTACTGGCCAGA 550 91 674 Antisense
TATAAGCACGGCGCTCTCATTGGTA 505 659 712 Antisense
GCTACAGTAACTTGCACTCATTTGC 113 303 743 Antisense
TTTGTGTATCCGGATGTCGCCGACC 275 667 784 Antisense
GTCGCCGACCATGTTAATGCATTTG 316 475 799 Antisense
CGATCCGAACGCCAGTTTTCCAGGC 470 249 905 Antisense
GAAATTGTCGGACCATCCAGTTCTC 138 365 960 Antisense
TCTCCAAACCCCCAATCGTAAAATG 505 609 995 Antisense
Sequence Source Affymetrix Proprietary Database