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[180390_at]

Description C31B8.2 /REP_DB=WormBase Gene ID /WP=CE08482 /TR=O16904 /GB=AAG23973.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 6.9
(-2.7)
A 		6.1
(-3)
A 		6.1
(-3)
A 		21.2
(3)
A 		15
B 8.2
(-2.5)
A 		25.4
(-0.7)
A 		3
(-3)
A 		62.1
(3)
A 		59
C 11
(-1.1)
A 		24
(3)
A 		5
(-3)
A 		15.1
(0.2)
A 		19
avr 8.7
(-2.1) 		18.5
(-0.1) 		4.7
(-3) 		32.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.3
(-3)
A 		6.7
(-0.2)
A 		9.6
(1.6)
A 		11.3
(2.7)
A 		11.2
(2.6)
A 		11.8
(3)
A 		10
B 6.6
(-3)
A 		16
(0.8)
A 		6.6
(-3)
A 		21.4
(3)
A 		8.9
(-2.1)
A 		7.6
(-2.6)
A 		15
C 8.9
(-3)
A 		35.5
(3)
A 		8.9
(-3)
A 		12.6
(-2.2)
A 		9.5
(-2.9)
A 		10.2
(-2.7)
A 		27
avr 5.9
(-3) 		19.4
(3) 		8.4
(-1.9) 		15.1
(1.1) 		9.9
(-1.2) 		9.9
(-1.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(1)
A 		1.3
(-3)
A 		1.6
(-2)
A 		3.1
(3)
A 		2
B 2.6
(-2.1)
A 		6.3
(-0.3)
A 		0.7
(-3)
A 		13.2
(3)
A 		13
C 3.6
(-0.8)
A 		6.9
(3)
A 		1.7
(-3)
A 		2.5
(-2.1)
A 		5
avr 2.9
(-1.1) 		4.8
(1.2) 		1.3
(-3) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.4
(1)
A 		2.1
(0.4)
A 		2.9
(2)
A 		3.4
(3)
A 		2.9
(2)
A 		3
B 2.3
(-2)
A 		5.3
(2.4)
A 		1.6
(-3)
A 		5.7
(3)
A 		3.6
(-0.1)
A 		2.8
(-1.2)
A 		4
C 3.3
(-2.3)
A 		10.8
(3)
A 		2.3
(-3)
A 		2.5
(-2.9)
A 		3.1
(-2.4)
A 		3.4
(-2.2)
A 		9
avr 2
(-3) 		6.2
(3) 		2
(-3) 		3.7
(-0.6) 		3.4
(-1) 		3
(-1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14817
Sequence Type Exemplar sequence
Representative Public ID C31B8.2 NCBI
Target Description C31B8.2 /REP_DB=WormBase Gene ID /WP=CE08482 /TR=O16904 /GB=AAG23973.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071391
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035071 ENSEMBL cdna:SNAP chromosome:CEL140:V:2916852:2917874:1 11/11 None
GENEFINDER00000035079 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2916350:2917874:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071391 5/11 Cross Hyb Matching Probes None
C31B8.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2916349-2917874(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503792 C31B8.2 [Caenorhabditis elegans] gb|AAG23973.2| Hypothetical protein C31B8.2 [Caenorhabditis elegans] 1.0E-119
blast NP_503792 C31B8.2 [Caenorhabditis elegans] gb|AAG23973.2| Hypothetical protein C31B8.2 [Caenorhabditis elegans] 1.0E-79
blast CAE62522 Hypothetical protein CBG06627 [Caenorhabditis briggsae] 2.0E-61
blast CAE62522 Hypothetical protein CBG06627 [Caenorhabditis briggsae] 3.0E-44
blast CAE66187 Hypothetical protein CBG11425 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:180390_AT
cgtggatgccgtgactacagtacagaagctaaatgctagcagtcaaagtcgaattgcatt
ccgacttttatcccgcaaccgaacgtgcccaaatttggaggcgtctccaattttgaaaga
gggaaccgtcaatagtgctgttcagcaagattaccgtattgagcaaggcacccaatcact
cactataaatcaatacctaccttaccgtatttctctgaaaaccaatgtttggacttttac
caccagaagtgaacgttttgattgtattacaggatctccgacaagacgaggcaatgatat
ctggtgtatgggtatgactgtttttgggatgtgccttaatcaatctcatgcagacatgat
tagtcagcttcagactcgtaaaccaatagcaggatttgagttcaactatttggatacata
tgctccaaatcccacgcttgactggctaccaaacaaaccggatggtattattggatccga
cgttacctgcgcttttttatataccaagaatggaactataggagtttctgagtccgcatg
tgatgttattagcaatattgaagacaagttttgcatggccggtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGATGCCGTGACTACAGTACAG 214 245 231 Antisense
GCAACCGAACGTGCCCAAATTTGGA 620 283 305 Antisense
GCACCCAATCACTCACTATAAATCA 654 313 398 Antisense
GGATGTGCCTTAATCAATCTCATGC 69 515 557 Antisense
TCAGCTTCAGACTCGTAAACCAATA 434 619 594 Antisense
GGATACATATGCTCCAAATCCCACG 485 509 642 Antisense
GACTGGCTACCAAACAAACCGGATG 227 375 670 Antisense
ATTATTGGATCCGACGTTACCTGCG 651 1 697 Antisense
GTTACCTGCGCTTTTTTATATACCA 252 447 712 Antisense
AGTTTCTGAGTCCGCATGTGATGTT 331 63 753 Antisense
GACAAGTTTTGCATGGCCGGTTTCT 539 363 793 Antisense
Sequence Source Affymetrix Proprietary Database