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[180387_at]

Description F31A3.5 /REP_DB=WormBase Gene ID /WP=CE28226 /TR=P90857 /GB=AAB36859.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 86.2
(0.5)
A 		114.9
(2.2)
A 		127.6
(3)
A 		29.8
(-3)
A 		98
B 104.6
(-0.8)
A 		175.7
(3)
A 		120.8
(0.1)
A 		63.7
(-3)
A 		112
C 106.4
(-0.4)
A 		162.7
(3)
A 		99.6
(-0.8)
A 		63.6
(-3)
A 		99
avr 99.1
(-0.2) 		151.1
(3) 		116
(0.9) 		52.4
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 15.3
(-2.5)
A 		88.6
(3)
A 		8
(-3)
A 		51.6
(0.2)
A 		62.6
(1.1)
A 		86.5
(2.8)
A 		81
B 133.1
(3)
A 		123
(1.9)
A 		97.6
(-0.7)
A 		87.7
(-1.7)
A 		100.3
(-0.4)
A 		75.6
(-3)
A 		58
C 176.2
(3)
M 		106.3
(-0.8)
A 		131
(0.5)
A 		74.9
(-2.5)
A 		108
(-0.7)
A 		65.7
(-3)
A 		111
avr 108.2
(3) 		106
(2.6) 		78.9
(-1.8) 		71.4
(-3) 		90.3
(0.1) 		75.9
(-2.3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 31.4
(2.6)
A 		24.9
(1.2)
A 		33.4
(3)
A 		4.4
(-3)
A 		29
B 33.3
(1)
A 		43.4
(3)
A 		28
(-0.1)
A 		13.6
(-3)
A 		30
C 35.2
(1.1)
A 		46.8
(3)
A 		34.7
(1)
A 		10.7
(-3)
A 		36
avr 33.3
(1.9) 		38.4
(3) 		32
(1.7) 		9.6
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		31.5
(3)
A 		1.7
(-3)
A 		13.1
(-0.7)
A 		18.9
(0.5)
A 		21.1
(0.9)
A 		30
B 46.3
(3)
A 		41
(1.6)
A 		23.7
(-2.9)
A 		23.2
(-3)
A 		40.8
(1.6)
A 		28.2
(-1.7)
A 		23
C 65.3
(3)
M 		32.4
(-0.9)
A 		33.4
(-0.8)
A 		15.1
(-3)
A 		35
(-0.6)
A 		22
(-2.2)
A 		50
avr 38.1
(3) 		35
(2.1) 		19.6
(-2.3) 		17.1
(-3) 		31.6
(1.1) 		23.8
(-1.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17344
Sequence Type Exemplar sequence
Representative Public ID F31A3.5 NCBI
Target Description F31A3.5 /REP_DB=WormBase Gene ID /WP=CE28226 /TR=P90857 /GB=AAB36859.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078439(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078439 NCBI Caenorhabditis elegans F31A3.5 (F31A3.5) mRNA, complete cds. 10/11 None
F31A3.5 ENSEMBL cdna:known chromosome:CEL140:X:17554914:17561374:-1 gene:F31A3.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17555340-17561335(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31A3.5
Entrez Gene 181785 Entrez gene
SwissProt P90857 EMBL-EBI
WormBase CE35513 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36859 Hypothetical protein F31A3.5 [Caenorhabditis elegans] ref|NP_510840.2| F31A3.5 [Caenorhabditis elegans] 0.0
blast CAE58695 Hypothetical protein CBG01874 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180387_AT
tcaatggcgcctcaacgagtgacctattctattgatgccaatgatgcgtataccttgcca
acgaccaatcgaccgacatcgtcgttcagaagtatggagacactcactggggtccccatc
cctcacgccacagcgtctgatgcaatgagccggagcatggactcttggggaacctcacct
agtcgtgccgtccacgaagtaccgattcggagagttgatcgaaactatgagggaggtggt
ccaagtgtagacgtgatcatttctggaagacgatatcgaagtggacagggagtaacagaa
gatccaatgagctccagctatgtgcatgattgcagggccgatagtgaccgggaaggtgtg
gagagtagttctgagaaacgccgagatcgcacaaaaagctgcagtgaagacgaagcagag
atgggtcgatccagtcgaatgtccagaaataagaaaggctggaaagaagaaactgaagag
gagagaataaagcgccttggcaccatctacactgcaaatgactacgtcagccaaatggac
atgacggaccagaagccatggccgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATGGCGCCTCAACGAGTGACCT 639 631 1753 Antisense
GAGTGACCTATTCTATTGATGCCAA 518 401 1769 Antisense
TGCGTATACCTTGCCAACGACCAAT 207 583 1797 Antisense
GACCAATCGACCGACATCGTCGTTC 412 383 1815 Antisense
GTATGGAGACACTCACTGGGGTCCC 502 455 1844 Antisense
CACGCCACAGCGTCTGATGCAATGA 67 201 1876 Antisense
GAGCATGGACTCTTGGGGAACCTCA 435 389 1905 Antisense
TAGTCGTGCCGTCCACGAAGTACCG 91 649 1932 Antisense
GAGCTCCAGCTATGTGCATGATTGC 662 387 2061 Antisense
AATAAAGCGCCTTGGCACCATCTAC 479 171 2238 Antisense
GACGGACCAGAAGCCATGGCCGATG 256 377 2295 Antisense
Sequence Source Affymetrix Proprietary Database