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[180385_at]

Description K03A11.1 /REP_DB=WormBase Gene ID /WP=CE06071 /TR=Q27502 /GB=CAB00865.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 48.8
(-2.7)
A 		124.5
(3)
A 		81.4
(-0.2)
A 		44.3
(-3)
A 		80
B 39.8
(-1)
A 		18.8
(-3)
A 		81.9
(3)
A 		41
(-0.9)
A 		63
C 59.8
(-3)
A 		69.3
(-2.2)
A 		73.1
(-1.9)
A 		133.9
(3)
A 		74
avr 49.5
(-3) 		70.9
(1.4) 		78.8
(3) 		73.1
(1.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 71.3
(0.1)
A 		95
(1.9)
A 		31.5
(-3)
A 		106.5
(2.8)
P 		108.5
(3)
A 		51.7
(-1.4)
A 		77
B 17.3
(-3)
A 		36.6
(-1.7)
A 		106.5
(3)
A 		67.4
(0.4)
A 		62.9
(0.1)
A 		44
(-1.2)
A 		89
C 30.7
(-3)
A 		96.3
(3)
A 		67.3
(0.3)
A 		83.9
(1.9)
A 		61
(-0.2)
A 		46.2
(-1.6)
A 		66
avr 39.8
(-3) 		76
(1.7) 		68.4
(0.7) 		85.9
(3) 		77.5
(1.9) 		47.3
(-2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.8
(0.3)
A 		27
(3)
A 		21.3
(1.3)
A 		6.5
(-3)
A 		21
B 12.7
(0.4)
A 		4.6
(-3)
A 		19
(3)
A 		8.7
(-1.3)
A 		14
C 19.8
(-3)
A 		19.9
(-2.9)
A 		25.5
(3)
A 		22.6
(-0.1)
A 		6
avr 16.8
(-0.3) 		17.2
(-0) 		21.9
(3) 		12.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.1
(-1.6)
A 		33.8
(3)
A 		6.9
(-3)
A 		27
(1.5)
P 		32.7
(2.8)
A 		12.6
(-1.7)
A 		27
B 6
(-3)
A 		12.2
(-1.1)
A 		25.9
(3)
A 		17.9
(0.6)
A 		25.5
(2.9)
A 		16.4
(0.1)
A 		20
C 11.4
(-3)
A 		29.4
(3)
A 		17.1
(-1.1)
A 		16.9
(-1.2)
A 		19.7
(-0.2)
A 		15.5
(-1.6)
A 		18
avr 10.2
(-3) 		25.1
(2.7) 		16.6
(-0.6) 		20.6
(0.9) 		26
(3) 		14.8
(-1.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17829
Sequence Type Exemplar sequence
Representative Public ID K03A11.1 NCBI
Target Description K03A11.1 /REP_DB=WormBase Gene ID /WP=CE06071 /TR=Q27502 /GB=CAB00865.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077765 NCBI Caenorhabditis elegans K03A11.1 (K03A11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007883 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13051982:13067155:1 11/11 None
SNAP00000007875 ENSEMBL cdna:SNAP chromosome:CEL140:X:13055987:13057950:1 9/11 None
K03A11.1 ENSEMBL cdna:known chromosome:CEL140:X:13051982:13058093:1 gene:K03A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13051981-13058093(+) 93.99 100.0
Public Domain and Genome References
Gene Title
Ensembl K03A11.1
Entrez Gene 181434 Entrez gene
SwissProt Q27502 EMBL-EBI
WormBase CE06071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00865 Hypothetical protein K03A11.1 [Caenorhabditis elegans] ref|NP_510166.1| K03A11.1 [Caenorhabditis elegans] 0.0
blast CAB00865 Hypothetical protein K03A11.1 [Caenorhabditis elegans] ref|NP_510166.1| K03A11.1 [Caenorhabditis elegans] 1.0E-106
blast CAE61376 Hypothetical protein CBG05220 [Caenorhabditis briggsae] 2.0E-77
blast CAB00868 Hypothetical protein K03A11.5 [Caenorhabditis elegans] ref|NP_510167.2| K03A11.5 [Caenorhabditis elegans] 6.0E-54
blast CAE65531 Hypothetical protein CBG10508 [Caenorhabditis briggsae] 5.0E-53
blast AAC69060 Hypothetical protein T05B4.11 [Caenorhabditis elegans] ref|NP_504148.1| T05B4.11 [Caenorhabditis elegans] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.1E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.1E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.9E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.1E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007883 1 1202-1224
Sequence
Target Sequence 
>C. ELEGANS:180385_AT
aaatactcaacaaacgccgtcaattgcgaaaacacatacagtgacgatgcttgtacaatg
atttatggtagcagtgttacagtgggcaccactgtcgagagaccgcttttgtgcttcatg
ctgaacggtgagaggagtgaagaaatgaaacggatttcaatgacatcttgtccgaaaact
tgcgggtattgttgccaaactgaaccatttgactgcaacaattctccatttccccgtatt
aattgtgcgatggtgacaagtagaatgtgcaaagatcctcaatggcgtgaagtgcttacg
gaagattgtccgaatgtttgcgggttttgtttggaaggtgggtgcttcgacaaggcagtc
gattgtactacggatatttcgatttgtatgaatgttggaatgcaggattttgtgaaggag
tattgtcgcaagacgtgcggattttgccgcccgaccgccgtggttacaccagaccccgac
tatcggggtaccaccacaaattgtgtggattataacacaaattgtgcgagttggtcgttt
cgtggttattgtaccagtccgttttacagctatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACTCAACAAACGCCGTCAATT 201 117 2305 Antisense
GTAGCAGTGTTACAGTGGGCACCAC 309 455 2372 Antisense
TCGAGAGACCGCTTTTGTGCTTCAT 616 601 2399 Antisense
AACTTGCGGGTATTGTTGCCAAACT 353 137 2481 Antisense
TCTCCATTTCCCCGTATTAATTGTG 172 607 2527 Antisense
GAATGTGCAAAGATCCTCAATGGCG 168 333 2567 Antisense
AGGTGGGTGCTTCGACAAGGCAGTC 204 49 2640 Antisense
CAAGACGTGCGGATTTTGCCGCCCG 72 183 2733 Antisense
GACTATCGGGGTACCACCACAAATT 292 371 2782 Antisense
GTGCGAGTTGGTCGTTTCGTGGTTA 116 477 2828 Antisense
GTACCAGTCCGTTTTACAGCTATGA 12 459 2855 Antisense
Sequence Source Affymetrix Proprietary Database