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[180384_at]

Description K10H10.9 /REP_DB=WormBase Gene ID /WP=CE16257 /TR=O45683 /GB=CAB05782.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 6.5
(-3)
A 		21.6
(2.7)
A 		22.3
(3)
A 		18.5
(1.6)
A 		16
B 4.9
(-3)
A 		9.8
(-2.2)
A 		36.7
(2.2)
A 		41.9
(3)
A 		37
C 9.5
(-3)
A 		47.8
(0.1)
A 		29.6
(-1.4)
A 		83.5
(3)
A 		74
avr 7
(-3) 		26.4
(-0.2) 		29.5
(0.3) 		48
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 21.4
(-0.9)
A 		7.5
(-2.7)
A 		52.2
(3)
A 		5.2
(-3)
A 		7.3
(-2.7)
A 		32.2
(0.4)
A 		47
B 5.4
(-2.4)
A 		2.9
(-3)
A 		3.5
(-2.9)
A 		7.2
(-2)
A 		22.8
(1.6)
A 		29
(3)
A 		26
C 5.1
(-2.8)
A 		46
(3)
A 		7
(-2.6)
A 		19.2
(-0.8)
A 		4
(-3)
A 		13.9
(-1.6)
A 		42
avr 10.6
(-3) 		18.8
(0.4) 		20.9
(1.3) 		10.5
(-3) 		11.4
(-2.6) 		25
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-3)
A 		4.7
(1.1)
A 		5.8
(3)
A 		2.7
(-2.5)
A 		3
B 1.6
(-3)
A 		2.4
(-2.3)
A 		8.5
(2.7)
A 		8.9
(3)
A 		7
C 3.1
(-3)
A 		13.8
(2.8)
A 		10.3
(0.9)
A 		14.1
(3)
A 		11
avr 2.4
(-3) 		7
(1.5) 		8.2
(2.6) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4
(-1.4)
A 		2.7
(-2.2)
A 		11.4
(3)
A 		1.3
(-3)
A 		2.2
(-2.5)
A 		7.8
(0.9)
A 		10
B 1.9
(-2.3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.9
(-2.3)
A 		9.2
(2)
A 		10.8
(3)
A 		10
C 1.9
(-2.7)
A 		14
(3)
A 		1.8
(-2.8)
A 		3.9
(-1.8)
A 		1.3
(-3)
A 		4.7
(-1.4)
A 		13
avr 2.6
(-2.8) 		5.9
(0.9) 		4.7
(-0.4) 		2.4
(-3) 		4.2
(-1) 		7.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3313
Sequence Type Exemplar sequence
Representative Public ID K10H10.9 NCBI
Target Description K10H10.9 /REP_DB=WormBase Gene ID /WP=CE16257 /TR=O45683 /GB=CAB05782.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064613(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064613 NCBI Caenorhabditis elegans K10H10.9 (K10H10.9) mRNA, complete cds. 10/11 None
GENEFINDER00000031905 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14510118:14515432:-1 9/11 None
K10H10.9 ENSEMBL cdna:known chromosome:CEL140:II:14513275:14515367:-1 gene:K10H10.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14513271-14515364(-) 92.47 100.0
Public Domain and Genome References
Gene Title
Ensembl K10H10.9
Entrez Gene 187287 Entrez gene
SwissProt O45683 EMBL-EBI
WormBase CE28603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05782 Hypothetical protein K10H10.9 [Caenorhabditis elegans] ref|NP_497014.1| K10H10.9 [Caenorhabditis elegans] 1.0E-143
blast CAB05782 Hypothetical protein K10H10.9 [Caenorhabditis elegans] ref|NP_497014.1| K10H10.9 [Caenorhabditis elegans] 2.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031905 1 181-200
Sequence
Target Sequence 
>C. ELEGANS:180384_AT
gactccacccatcaaaaattgtgccaatcagtcatttcaatatgatgagcttcgagagaa
tgagaaggtgcacatcaagtgtggaggtcaaccagtggcacatgcaaaagtgcatattca
cgattataaagatgaatttacaaaaaaattaagaattttttttaccacccgggtccgagc
aaactgttcaaaaaaatgctttattaatagcgattttataagattgtttgaaaataggga
aaatctcagtattttcaacttttttggaagtttttgtagctccgaaaaaaaaattaacat
tcatattttcaaaaaaattaaacgttttaatatgatatttggttatttcggacatttcca
tcaatccatctgggaccttcacggaattacaaacgagaaggggacatatcactttcccag
cttagaaagtctaaattcgttggactttgaaagcgcccgaatcatgattaaggacacgtg
tgtgctcaaacaaactaaatgcaaccttccctacaaccaattcgaaattccactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCACCCATCAAAAATTGTGCC 43 373 270 Antisense
TGTGCCAATCAGTCATTTCAATATG 155 557 289 Antisense
CAAGTGTGGAGGTCAACCAGTGGCA 14 185 345 Antisense
GGTTATTTCGGACATTTCCATCAAT 168 507 610 Antisense
TTCCATCAATCCATCTGGGACCTTC 636 697 625 Antisense
CCATCTGGGACCTTCACGGAATTAC 620 269 635 Antisense
GGGGACATATCACTTTCCCAGCTTA 78 499 669 Antisense
TTCGTTGGACTTTGAAAGCGCCCGA 618 653 705 Antisense
GAAAGCGCCCGAATCATGATTAAGG 71 359 718 Antisense
GACACGTGTGTGCTCAAACAAACTA 548 367 742 Antisense
TACAACCAATTCGAAATTCCACTCC 423 641 781 Antisense
Sequence Source Affymetrix Proprietary Database