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[180383_at]

Description W09C3.3 /REP_DB=WormBase Gene ID /WP=CE14748 /TR=P91530 /GB=AAC24413.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 43.4
(1.1)
P 		22.3
(-1.2)
A 		5.6
(-3)
A 		60.3
(3)
M 		55
B 37.9
(0.6)
A 		17.4
(-3)
A 		51.4
(3)
P 		43.7
(1.6)
P 		34
C 40
(-0.2)
A 		5.8
(-3)
A 		37.7
(-0.4)
M 		79
(3)
P 		73
avr 40.4
(0.3) 		15.2
(-3) 		31.6
(-0.9) 		61
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 1.9
(-3)
A 		45.6
(1.4)
A 		62.1
(3)
P 		24.7
(-0.7)
A 		4.3
(-2.8)
A 		19.1
(-1.3)
A 		60
B 30.9
(0.5)
P 		46.3
(3)
A 		37.6
(1.6)
A 		8.8
(-3)
A 		10.6
(-2.7)
A 		28.9
(0.2)
P 		38
C 30.9
(1.5)
P 		39.5
(3)
P 		4.5
(-3)
A 		16.3
(-1)
A 		33.8
(2)
A 		30.9
(1.5)
P 		35
avr 21.2
(-1.9) 		43.8
(3) 		34.7
(1) 		16.6
(-2.9) 		16.2
(-3) 		26.3
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.8
(3)
P 		4.8
(-1.6)
A 		1.5
(-3)
A 		8.8
(0.1)
M 		14
B 12.1
(3)
A 		4.3
(-3)
A 		11.9
(2.8)
P 		9.3
(0.8)
P 		8
C 13.3
(3)
A 		1.7
(-3)
A 		13.1
(2.9)
M 		13.3
(3)
P 		12
avr 13.7
(3) 		3.6
(-3) 		8.8
(0.1) 		10.5
(1.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.3
(-3)
A 		16.2
(3)
A 		13.5
(2)
P 		6.3
(-0.7)
A 		1.3
(-2.6)
A 		4.6
(-1.4)
A 		16
B 10.8
(0.9)
P 		15.4
(3)
A 		9.1
(0.1)
A 		2.3
(-3)
A 		4.3
(-2.1)
A 		10.8
(0.9)
P 		13
C 11.5
(2.7)
P 		12
(3)
P 		1.2
(-3)
A 		3.3
(-1.8)
A 		10.9
(2.4)
A 		10.3
(2.1)
P 		11
avr 7.5
(-1) 		14.5
(3) 		7.9
(-0.8) 		4
(-3) 		5.5
(-2.1) 		8.6
(-0.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.780
Sequence Type Exemplar sequence
Representative Public ID W09C3.3 NCBI
Target Description W09C3.3 /REP_DB=WormBase Gene ID /WP=CE14748 /TR=P91530 /GB=AAC24413.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059027(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059027 NCBI Caenorhabditis elegans W09C3.3 (W09C3.3) mRNA, complete cds. 10/11 None
GENEFINDER00000028192 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4706765:4708763:1 11/11 None
SNAP00000028185 ENSEMBL cdna:SNAP chromosome:CEL140:I:4707237:4708763:1 9/11 None
W09C3.3 ENSEMBL cdna:known chromosome:CEL140:I:4707906:4708763:1 gene:W09C3.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4707236-4708763(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C3.3
Entrez Gene 189311 Entrez gene
SwissProt P91530 EMBL-EBI
WormBase CE36728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85466 Hypothetical protein F28A10.1 [Caenorhabditis elegans] ref|NP_493824.1| F28A10.1 [Caenorhabditis elegans] 1.0E-120
blast AAC24413 Hypothetical protein W09C3.3 [Caenorhabditis elegans] ref|NP_491428.2| W09C3.3 [Caenorhabditis elegans] 8.0E-95
blast AAC24413 Hypothetical protein W09C3.3 [Caenorhabditis elegans] ref|NP_491428.2| W09C3.3 [Caenorhabditis elegans] 3.0E-94
blast AAK85466 Hypothetical protein F28A10.1 [Caenorhabditis elegans] ref|NP_493824.1| F28A10.1 [Caenorhabditis elegans] 4.0E-91
blast CAE74542 Hypothetical protein CBG22299 [Caenorhabditis briggsae] 4.0E-90
blast AAK85466 Hypothetical protein F28A10.1 [Caenorhabditis elegans] ref|NP_493824.1| F28A10.1 [Caenorhabditis elegans] 3.0E-74
blast CAE74542 Hypothetical protein CBG22299 [Caenorhabditis briggsae] 1.0E-67
blast AAC24413 Hypothetical protein W09C3.3 [Caenorhabditis elegans] ref|NP_491428.2| W09C3.3 [Caenorhabditis elegans] 5.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.1E-26
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.9E-55
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.9E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028192 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:180383_AT
attgccagttcgtaacactctgaaagatgtgtttataacacttgggattggacaggatat
aagtgctgaggtggcgtttcagaaggaaatgcacaacattggacacaatgttactttcta
tggagctgacccaattgtggaaggaaattcagttttatattcaaaaattggaaaatattt
cccatttgctgttggtgagaaagctggattttcaatggctagtgtactttcgaaaggaga
atacattagtatgccagtagttcatgtagatttatattactttttgaaagaagttcttgg
tgaaaaagttattgattatttatggatggattctgaatactctgaatatgggactttcga
tattttctataaaaatggaaaattagaacaattaggaattactttttgtcaaatgagttt
ggaagttcacaacccaagcaaagaacaaaaagaacagttcatgacatttattaaacgatt
ggttgaagaaaaatcgtttggattcttcttcagtgacaatgttggacacatgagaatgtg
gcttttcaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCAGTTCGTAACACTCTGAAA 545 7 264 Antisense
GATATAAGTGCTGAGGTGGCGTTTC 556 425 319 Antisense
GACACAATGTTACTTTCTATGGAGC 198 367 365 Antisense
TTCCCATTTGCTGTTGGTGAGAAAG 237 697 442 Antisense
GATTTTCAATGGCTAGTGTACTTTC 163 429 470 Antisense
ATACATTAGTATGCCAGTAGTTCAT 124 25 504 Antisense
GAATACTCTGAATATGGGACTTTCG 118 325 598 Antisense
GAGTTTGGAAGTTCACAACCCAAGC 468 399 678 Antisense
AAAATCGTTTGGATTCTTCTTCAGT 479 131 753 Antisense
GGATTCTTCTTCAGTGACAATGTTG 148 509 763 Antisense
CATGAGAATGTGGCTTTTCAATTTT 284 211 792 Antisense
Sequence Source Affymetrix Proprietary Database