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[180382_s_at]

Description C35B1.2 /REP_DB=WormBase Gene ID /WP=CE27823 /TR=O45061 /GB=AAC02562.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 67      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1923
1 2 3 4 range
A 809.2
(-1.5)
P 		449.9
(-3)
P 		493.7
(-2.8)
P 		1913
(3)
P 		1463
B 891
(-1.1)
P 		381.7
(-2.7)
P 		275.6
(-3)
P 		2199
(3)
P 		1923
C 858.2
(-1.3)
P 		450.8
(-2.9)
P 		421
(-3)
P 		2003.5
(3)
P 		1583
avr 852.8
(-1.3) 		427.5
(-2.9) 		396.8
(-3) 		2038.5
(3) 		1642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 755
1 2 3 4 5 6 range
A 737
(-0.5)
P 		635
(-2.8)
P 		750.5
(-0.2)
P 		678.2
(-1.8)
P 		626.5
(-3)
P 		894.2
(3)
P 		268
B 844.3
(0)
P 		728.5
(-0.9)
P 		739.5
(-0.8)
P 		466.6
(-3)
P 		658.7
(-1.5)
P 		1221.4
(3)
P 		755
C 685.5
(-1.4)
P 		815.3
(-0.3)
P 		535.7
(-2.6)
P 		691.5
(-1.3)
P 		489.9
(-3)
P 		1217.1
(3)
P 		727
avr 755.6
(-1.1) 		726.3
(-1.4) 		675.2
(-2) 		612.1
(-2.8) 		591.7
(-3) 		1110.9
(3) 		519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 294.6
(3)
P 		97.7
(-3)
P 		129.1
(-2)
P 		280
(2.6)
P 		197
B 284.1
(0.3)
P 		94.3
(-2.5)
P 		63.9
(-3)
P 		468.6
(3)
P 		405
C 284.1
(1.5)
P 		129.6
(-3)
P 		146.7
(-2.5)
P 		337.8
(3)
P 		208
avr 287.6
(1.2) 		107.2
(-3) 		113.2
(-2.9) 		362.1
(3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 135.9
(-3)
P 		225.9
(3)
P 		163.4
(-1.2)
P 		172
(-0.6)
P 		189
(0.5)
P 		217.7
(2.5)
P 		90
B 293.8
(0.1)
P 		242.5
(-0.8)
P 		179.6
(-2)
P 		123.6
(-3)
P 		267.6
(-0.4)
P 		455.4
(3)
P 		332
C 254.1
(-0.4)
P 		248.8
(-0.5)
P 		136.4
(-3)
P 		139.1
(-2.9)
P 		158.5
(-2.5)
P 		407.4
(3)
P 		271
avr 227.9
(-0.7) 		239.1
(-0.4) 		159.8
(-2.6) 		144.9
(-3) 		205
(-1.3) 		360.2
(3) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180382_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11113
Sequence Type Exemplar sequence
Representative Public ID C35B1.2 NCBI
Target Description C35B1.2 /REP_DB=WormBase Gene ID /WP=CE27823 /TR=O45061 /GB=AAC02562.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068078 NCBI Caenorhabditis elegans C35B1.2a (C35B1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000043236 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4086218:4102550:1 10/11 None
C35B1.2a ENSEMBL cdna:known chromosome:CEL140:IV:4086218:4102888:1 gene:C35B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177169 3 1 NM_068078 180382_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4086116-4102894(+) 99.36 100.0
Public Domain and Genome References
Ensembl C35B1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02562 Hypothetical protein C35B1.2a [Caenorhabditis elegans] ref|NP_500479.1| C35B1.2a [Caenorhabditis elegans] 0.0
blast AAC02562 Hypothetical protein C35B1.2a [Caenorhabditis elegans] ref|NP_500479.1| C35B1.2a [Caenorhabditis elegans] 1.0E-180
blast CAE56744 Hypothetical protein CBG24538 [Caenorhabditis briggsae] 1.0E-146
blast AAQ91907 Hypothetical protein C35B1.2c [Caenorhabditis elegans] ref|NP_001023046.1| C35B1.2c [Caenorhabditis elegans] 1.0E-134
blast AAQ91907 Hypothetical protein C35B1.2c [Caenorhabditis elegans] ref|NP_001023046.1| C35B1.2c [Caenorhabditis elegans] 1.0E-133
blast CAE56744 Hypothetical protein CBG24538 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:180382_S_AT
tgtggtggtgatcgggcacttttcctagacggaaatgaatggcaacgaccatcgggaagt
catcgattcttcagaattttgtatccaaatcaggatcatggagatttcgatacgtggaat
attgaaagagcatcgtcgaattttaatgtgacgaatagcgatattcagataatctgccgc
cgttacaatggccaaaagtacagccagtcgtttggatttgtgcggaaaatttatttgctc
aaaattttgccactatgcccgccagaagtcgctgagcaacttcataatcgagatttggca
gtaatatcgtattcctacagaaatgctccgcatccgacgtttattgagcaaccggatagg
cagaagcttccagatggtcaacgtgttggtgaagaagttgaattagtttccggagatgtg
atgttcgacgatgatattagtccagaaatgcgagaaatggttgaaaatatggaaagaaaa
aagaaaattaattcggaaagattaatggaattactacaaagaatacatcgaattgatcaa
atttgtaaaaaagaagcttggctggaatcgtcggcagaagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGTGGTGATCGGGCACTTTTCC 587 555 1270 Antisense
GGCAACGACCATCGGGAAGTCATCG 304 529 1310 Antisense
AATCTGCCGCCGTTACAATGGCCAA 309 169 1440 Antisense
CAGCCAGTCGTTTGGATTTGTGCGG 236 201 1470 Antisense
CTCAAAATTTTGCCACTATGCCCGC 608 227 1507 Antisense
CCGCCAGAAGTCGCTGAGCAACTTC 111 263 1528 Antisense
GGCAGTAATATCGTATTCCTACAGA 83 537 1566 Antisense
CTACAGAAATGCTCCGCATCCGACG 193 227 1584 Antisense
GCAACCGGATAGGCAGAAGCTTCCA 146 321 1617 Antisense
GAAGCTTCCAGATGGTCAACGTGTT 23 341 1632 Antisense
GGCTGGAATCGTCGGCAGAAGTTCA 243 539 1829 Antisense
Sequence Source Affymetrix Proprietary Database