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[180381_at]

Description ZC404.1 /REP_DB=WormBase Gene ID /WP=CE07592 /TR=Q23291 /GB=AAA97967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 56.8
(0.8)
A 		69.9
(3)
A 		33.6
(-3)
A 		34.1
(-2.9)
A 		36
B 86.6
(3)
A 		47.4
(-0.3)
A 		14.7
(-3)
A 		41.7
(-0.7)
A 		72
C 95.9
(2.9)
A 		28.4
(-2.7)
A 		24.3
(-3)
A 		97.4
(3)
A 		73
avr 79.8
(3) 		48.6
(-0.4) 		24.2
(-3) 		57.7
(0.6) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 133.9
(3)
A 		39.3
(-1.5)
A 		86.3
(0.8)
A 		53.3
(-0.8)
A 		41.5
(-1.3)
A 		6.4
(-3)
A 		128
B 54.3
(1.5)
A 		69
(3)
A 		23.8
(-1.6)
A 		48.1
(0.9)
A 		10.6
(-3)
A 		37.2
(-0.3)
A 		58
C 68.8
(3)
A 		62.3
(2.4)
A 		20
(-1.7)
A 		37.8
(0)
A 		6.5
(-3)
A 		42.8
(0.5)
A 		62
avr 85.7
(3) 		56.9
(0.4) 		43.4
(-0.8) 		46.4
(-0.6) 		19.5
(-3) 		28.8
(-2.2) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 20.7
(3)
A 		15.2
(0.9)
A 		8.8
(-1.5)
A 		5
(-3)
A 		16
B 27.6
(3)
A 		11.7
(-0.9)
A 		3.4
(-3)
A 		8.9
(-1.6)
A 		24
C 31.7
(3)
A 		8.2
(-3)
A 		8.5
(-2.9)
A 		16.4
(-0.9)
A 		24
avr 26.7
(3) 		11.7
(-1.5) 		6.9
(-3) 		10.1
(-2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 24.7
(3)
A 		14
(0.2)
A 		18.8
(1.5)
A 		13.5
(0.1)
A 		12.5
(-0.2)
A 		1.6
(-3)
A 		23
B 18.9
(1.7)
A 		23
(3)
A 		5.8
(-2.5)
A 		12.7
(-0.3)
A 		4.3
(-3)
A 		13.9
(0.1)
A 		19
C 25.5
(3)
A 		19
(1.3)
A 		5.1
(-2.2)
A 		7.6
(-1.6)
A 		2.1
(-3)
A 		14.3
(0.1)
A 		23
avr 23
(3) 		18.7
(1.5) 		9.9
(-1.7) 		11.3
(-1.2) 		6.3
(-3) 		9.9
(-1.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12024
Sequence Type Exemplar sequence
Representative Public ID ZC404.1 NCBI
Target Description ZC404.1 /REP_DB=WormBase Gene ID /WP=CE07592 /TR=Q23291 /GB=AAA97967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072321 NCBI Caenorhabditis elegans ZC404.1 (ZC404.1) mRNA, complete cds. 11/11 None
SNAP00000042520 ENSEMBL cdna:SNAP chromosome:CEL140:V:6797055:6797724:1 11/11 None
GENEFINDER00000042526 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6796353:6797821:1 11/11 None
ZC404.1 ENSEMBL cdna:known chromosome:CEL140:V:6796530:6797724:1 gene:ZC404.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6796530-6797725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC404.1
Entrez Gene 191154 Entrez gene
SwissProt Q23291 EMBL-EBI
WormBase CE07592 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97967 Hypothetical protein ZC404.1 [Caenorhabditis elegans] ref|NP_504722.1| ZC404.1 [Caenorhabditis elegans] 1.0E-63
blast AAA97967 Hypothetical protein ZC404.1 [Caenorhabditis elegans] ref|NP_504722.1| ZC404.1 [Caenorhabditis elegans] 3.0E-62
blast AAA97967 Hypothetical protein ZC404.1 [Caenorhabditis elegans] ref|NP_504722.1| ZC404.1 [Caenorhabditis elegans] 3.0E-54
blast CAE71952 Hypothetical protein CBG19020 [Caenorhabditis briggsae] 9.0E-13
blast CAE71952 Hypothetical protein CBG19020 [Caenorhabditis briggsae] 1.0E-12
blast CAE71952 Hypothetical protein CBG19020 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042526 1 47-66
Sequence
Target Sequence 
>C. ELEGANS:180381_AT
gaaacgtgtagcgtctcgaagaccatatcgtcccagaaagccatatctaccacgtcctcc
atctcaattagaaattattcagcaacatgtaatgagattgataaaacaacaagttgagca
aagaaaacgggaggcaaaacgattggaggaggcggctaaggagccacctaaaattccaga
aaagaagagtcgtagaaaataccgaatgacatttgtgcctccagctgagacggaagagca
agagctgcagggtggtcaagtagaacgacgagaagtggtcactgcgcgtgacttggctcg
gctcatgccaccagaacaaggagttattgtggtgtgcaaccccgagagatcggtctgccg
tatcaaaataaggacagaagacgtgcgaaaggaggttgaaaccgtggcaaaaccacgcta
cagtaatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGTGTAGCGTCTCGAAGACCA 684 355 60 Antisense
GTCTCGAAGACCATATCGTCCCAGA 214 471 72 Antisense
GTCCCAGAAAGCCATATCTACCACG 548 475 89 Antisense
GAGGAGGCGGCTAAGGAGCCACCTA 148 401 205 Antisense
TTTGTGCCTCCAGCTGAGACGGAAG 434 663 271 Antisense
GCAAGAGCTGCAGGGTGGTCAAGTA 584 319 297 Antisense
AAGTGGTCACTGCGCGTGACTTGGC 402 159 332 Antisense
CGGCTCATGCCACCAGAACAAGGAG 586 241 358 Antisense
GTTATTGTGGTGTGCAACCCCGAGA 652 447 382 Antisense
CAACCCCGAGAGATCGGTCTGCCGT 192 185 396 Antisense
GGCAAAACCACGCTACAGTAATCCT 193 533 465 Antisense
Sequence Source Affymetrix Proprietary Database