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[180380_at]

Description K02F3.5 /REP_DB=WormBase Gene ID /WP=CE01351 /TR=Q21146 /GB=AAK21420.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 21.3
(-2.6)
A 		50.8
(3)
A 		43.8
(1.7)
A 		19.1
(-3)
A 		32
B 33.2
(-2.9)
A 		83.7
(3)
A 		60.4
(0.3)
A 		32
(-3)
A 		52
C 10.4
(-3)
A 		15.8
(-2.2)
A 		50.9
(3)
A 		51
(3)
A 		41
avr 21.6
(-3) 		50.1
(2.7) 		51.7
(3) 		34
(-0.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 23.6
(-3)
A 		28.4
(-2.4)
A 		44.2
(-0.4)
A 		71.5
(3)
A 		39.7
(-1)
A 		24
(-2.9)
A 		48
B 49.4
(0.2)
A 		57.6
(1.1)
A 		19.2
(-3)
A 		75.6
(3)
A 		53.5
(0.6)
A 		58.7
(1.2)
M 		56
C 14.2
(-3)
A 		31.8
(-1.7)
A 		68.3
(0.9)
A 		97.4
(3)
A 		46.2
(-0.7)
A 		32
(-1.7)
A 		83
avr 29.1
(-3) 		39.3
(-1.8) 		43.9
(-1.3) 		81.5
(3) 		46.5
(-1) 		38.2
(-2) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.7
(0.4)
A 		11
(2.7)
A 		11.5
(3)
A 		2.8
(-3)
A 		9
B 10.6
(-1.4)
A 		20.7
(3)
A 		14
(0.1)
A 		6.8
(-3)
A 		14
C 3.4
(-3)
A 		4.5
(-2.5)
A 		17.8
(3)
A 		8.6
(-0.8)
A 		14
avr 7.2
(-2.2) 		12.1
(1.3) 		14.4
(3) 		6.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.3
(-3)
A 		10.1
(-0.5)
A 		9.6
(-0.7)
A 		18.1
(3)
A 		12
(0.3)
A 		5.8
(-2.3)
A 		14
B 17.2
(1.4)
A 		19.2
(2.1)
A 		4.7
(-3)
A 		20
(2.3)
A 		21.7
(2.9)
A 		21.9
(3)
M 		17
C 5.3
(-3)
A 		9.7
(-1.2)
A 		17.4
(2.1)
A 		19.6
(3)
A 		14.9
(1)
A 		10.7
(-0.7)
A 		14
avr 8.9
(-3) 		13
(-0.6) 		10.6
(-2) 		19.2
(3) 		16.2
(1.3) 		12.8
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8313
Sequence Type Exemplar sequence
Representative Public ID K02F3.5 NCBI
Target Description K02F3.5 /REP_DB=WormBase Gene ID /WP=CE01351 /TR=Q21146 /GB=AAK21420.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064866
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008351 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:823214:826421:1 None
SNAP00000008331 ENSEMBL cdna:SNAP chromosome:CEL140:III:823849:824281:1 None
SNAP00000011592 ENSEMBL cdna:SNAP chromosome:CEL140:III:688795:689073:-1 None
K02F3.5 ENSEMBL cdna:known chromosome:CEL140:III:823214:828037:1 gene:K02F3.5 None
NM_064866 NCBI Caenorhabditis elegans K02F3.5 (K02F3.5) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:823213-829334(+) 90.76 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.5
Entrez Gene 186903 Entrez gene
SwissProt Q21146 EMBL-EBI
WormBase CE28940 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95880 Hypothetical protein K02F3.5 [Caenorhabditis elegans] ref|NP_497267.1| K02F3.5 [Caenorhabditis elegans] 0.0
blast T16526 hypothetical protein K02F3.5 - Caenorhabditis elegans 1.0E-155
blast AAK95880 Hypothetical protein K02F3.5 [Caenorhabditis elegans] ref|NP_497267.1| K02F3.5 [Caenorhabditis elegans] 1.0E-154
blast T16526 hypothetical protein K02F3.5 - Caenorhabditis elegans 1.0E-132
blast CAE56482 Hypothetical protein CBG24196 [Caenorhabditis briggsae] 1.0E-106
blast CAE56482 Hypothetical protein CBG24196 [Caenorhabditis briggsae] 1.0E-104
blast AAK95880 Hypothetical protein K02F3.5 [Caenorhabditis elegans] ref|NP_497267.1| K02F3.5 [Caenorhabditis elegans] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.5E-30
Pfam IPR001304 EMBL-EBI C-type lectin 8.7E-26
Sequence
Target Sequence 
>C. ELEGANS:180380_AT
agtcgccattaaccaaacttctcacgttcaaactatccacggctgcttcaatgtccaatg
ctccgtccgcagttccccagatgataagtcgtgccaaccagtgctgtgcggctcttgaaa
aaagtcggctctcggcttgcgccgagagccaagtcgaaattttttttcggctctcggctc
gcgccgagagccgagagccgcacagcactggtgtcaaccttcatagactttcttcagcct
tgattgagggtctcaagcaagggtgtgcggcaaatttgccaaatatgagaaggacggcaa
atttcaaaaaagtgtatttgccgaatttgccgaactgggcaaattttgaaatttgccgca
cacaccacaaactggattttaaaaatttaactgaaactattgattttgttcaacacgcct
ctggtatcatgagcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGCCATTAACCAAACTTCTCAC 375 53 1034 Antisense
TTCAAACTATCCACGGCTGCTTCAA 596 685 1060 Antisense
TCCGCAGTTCCCCAGATGATAAGTC 687 595 1099 Antisense
TGATAAGTCGTGCCAACCAGTGCTG 405 563 1115 Antisense
GCTTGCGCCGAGAGCCAAGTCGAAA 656 303 1168 Antisense
CACAGCACTGGTGTCAACCTTCATA 618 191 1234 Antisense
ACCTTCATAGACTTTCTTCAGCCTT 530 87 1250 Antisense
GGGTCTCAAGCAAGGGTGTGCGGCA 585 497 1281 Antisense
GCCGCACACACCACAAACTGGATTT 62 285 1388 Antisense
ATTGATTTTGTTCAACACGCCTCTG 491 3 1432 Antisense
ACACGCCTCTGGTATCATGAGCATT 578 109 1446 Antisense
Sequence Source Affymetrix Proprietary Database