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[180379_s_at]

Description C17F4.5 /REP_DB=WormBase Gene ID /WP=CE27075 /TR=O16541 /GB=AAK31440.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 37      6grp_total > 92      4grp_total > 57      6grp_highest_sub > 05      6grp_high1_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11783
1 2 3 4 range
A 3657.9
(-2.2)
P 		11473.7
(1.8)
P 		13890
(3)
P 		2175.4
(-3)
P 		11715
B 3573.8
(-2.3)
P 		10196.8
(1.3)
P 		13245.9
(3)
P 		2332.4
(-3)
P 		10914
C 3359.9
(-2.2)
P 		10143
(1.9)
P 		12031.4
(3)
P 		2106.9
(-3)
P 		9925
avr 3530.5
(-2.3) 		10604.5
(1.6) 		13055.8
(3) 		2204.9
(-3) 		10851

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2826
1 2 3 4 5 6 range
A 5136.1
(-0.4)
P 		4384.4
(-2)
P 		4859.9
(-1)
P 		5557.5
(0.5)
P 		6758.4
(3)
P 		3932.3
(-3)
P 		2826
B 4749.4
(-1.5)
P 		4415.9
(-2.6)
P 		4297.1
(-3)
P 		5375.9
(0.6)
P 		6109.7
(3)
P 		4442.4
(-2.5)
P 		1813
C 4404.2
(-2.3)
P 		4201.8
(-3)
P 		4843.7
(-0.9)
P 		5855.7
(2.5)
P 		6014.2
(3)
P 		4394.9
(-2.4)
P 		1812
avr 4763.2
(-1.5) 		4334
(-2.8) 		4666.9
(-1.8) 		5596.4
(0.9) 		6294.1
(3) 		4256.5
(-3) 		2038
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3875
1 2 3 4 range
A 1331.8
(-1.2)
P 		2490.6
(0.9)
P 		3631.1
(3)
P 		318.4
(-3)
P 		3313
B 1139.7
(-1.5)
P 		2518.4
(1.7)
P 		3069.4
(3)
P 		497
(-3)
P 		2572
C 1112.2
(-1.8)
P 		2916.2
(1)
P 		4193.3
(3)
P 		355.3
(-3)
P 		3838
avr 1194.6
(-1.5) 		2641.7
(1.2) 		3631.3
(3) 		390.2
(-3) 		3241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1536
1 2 3 4 5 6 range
A 946.8
(-3)
P 		1559.3
(0.4)
P 		1058.4
(-2.4)
P 		1409.5
(-0.5)
P 		2039.4
(3)
P 		957.4
(-2.9)
P 		1093
B 1652.5
(-0.5)
P 		1469.9
(-1.2)
P 		1043.5
(-3)
P 		1423.9
(-1.4)
P 		2482.3
(3)
P 		1656.5
(-0.4)
P 		1439
C 1632.5
(0.6)
P 		1282.1
(-2.2)
P 		1232.8
(-2.6)
P 		1177.6
(-3)
P 		1946.1
(3)
P 		1471.2
(-0.7)
P 		769
avr 1410.6
(-1.3) 		1437.1
(-1.1) 		1111.6
(-3) 		1337
(-1.7) 		2155.9
(3) 		1361.7
(-1.6) 		1044
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180379_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5499
Sequence Type Exemplar sequence
Representative Public ID C17F4.5 NCBI
Target Description C17F4.5 /REP_DB=WormBase Gene ID /WP=CE27075 /TR=O16541 /GB=AAK31440.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062086 NCBI Caenorhabditis elegans C17F4.7 (C17F4.7) mRNA, complete cds. 11/11 None
SNAP00000021556 ENSEMBL cdna:SNAP chromosome:CEL140:II:3243687:3245981:-1 11/11 None
GENEFINDER00000021579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3245165:3248114:-1 11/11 None
C17F4.7.2 ENSEMBL cdna:known chromosome:CEL140:II:3244648:3245998:-1 gene:C17F4.7 11/11 None
C17F4.7.4 ENSEMBL cdna:known chromosome:CEL140:II:3244648:3245998:-1 gene:C17F4.7 11/11 None
C17F4.7.1 ENSEMBL cdna:known chromosome:CEL140:II:3244648:3245998:-1 gene:C17F4.7 11/11 None
C17F4.7.3 ENSEMBL cdna:known chromosome:CEL140:II:3244927:3245998:-1 gene:C17F4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3243685-3248113(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.7
Entrez Gene 173668 Entrez gene
SwissProt Q9BKP8 EMBL-EBI
WormBase CE27076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31440 Hypothetical protein C17F4.5 [Caenorhabditis elegans] ref|NP_494488.1| C17F4.5 [Caenorhabditis elegans] 0.0
blast T31924 hypothetical protein C17F4.5 - Caenorhabditis elegans 1.0E-123
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 1.0E-108
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 1.0E-104
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 1.0E-103
blast NP_740790 Y51F10.7 [Caenorhabditis elegans] gb|AAL77192.1| Hypothetical protein Y51F10.7 [Caenorhabditis elegans] 5.0E-84
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 2.59999990463257
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:180379_S_AT
agtcaggatggactggtggatgctcttggaagtcgattcccacttttggattgttggatg
atattgatggctgtgattttgcacacaattgcccgttggagtcaggaccgctgtttttga
ttttgccgttggatttgagccagttttctgtcatcattgagcttctggctgcgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCAGGATGGACTGGTGGATGCTC 76 61 938 Antisense
GATGCTCTTGGAAGTCGATTCCCAC 74 415 956 Antisense
GTCGATTCCCACTTTTGGATTGTTG 339 473 969 Antisense
TGATGGCTGTGATTTTGCACACAAT 576 567 1002 Antisense
TGCACACAATTGCCCGTTGGAGTCA 100 577 1017 Antisense
CGTTGGAGTCAGGACCGCTGTTTTT 394 245 1031 Antisense
GGACCGCTGTTTTTGATTTTGCCGT 636 523 1042 Antisense
TTTGATTTTGCCGTTGGATTTGAGC 493 665 1053 Antisense
GGATTTGAGCCAGTTTTCTGTCATC 34 511 1068 Antisense
GCCAGTTTTCTGTCATCATTGAGCT 272 281 1076 Antisense
CATCATTGAGCTTCTGGCTGCGCAT 86 213 1089 Antisense
Sequence Source Affymetrix Proprietary Database