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[180378_at]

Description C17F4.5 /REP_DB=WormBase Gene ID /WP=CE27075 /TR=O16541 /GB=AAK31440.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 35.2
(-3)
A 		183.2
(1.9)
P 		215.1
(3)
P 		109.3
(-0.5)
A 		180
B 80.9
(-2.2)
P 		178.8
(3)
P 		173.6
(2.7)
P 		66
(-3)
A 		113
C 60.6
(-2.3)
P 		165.9
(3)
P 		140.7
(1.7)
P 		46.5
(-3)
A 		119
avr 58.9
(-3) 		176
(3) 		176.5
(3) 		73.9
(-2.2) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 38.7
(-3)
A 		173.3
(-0.7)
P 		209.4
(-0.1)
P 		339.1
(2.1)
P 		389.7
(3)
P 		184.8
(-0.5)
P 		351
B 81.7
(-3)
A 		139.9
(-2.1)
P 		157.9
(-1.8)
P 		278.6
(0.1)
P 		464
(3)
P 		159.2
(-1.8)
P 		382
C 38.4
(-3)
A 		184.8
(-0.7)
P 		170.4
(-0.9)
P 		358.7
(2.1)
P 		417.4
(3)
P 		187.3
(-0.6)
P 		379
avr 52.9
(-3) 		166
(-1.2) 		179.2
(-1) 		325.5
(1.4) 		423.7
(3) 		177.1
(-1) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 12.8
(-3)
A 		39.8
(0.7)
P 		56.2
(3)
P 		16
(-2.6)
A 		43
B 25.8
(-0.7)
P 		44.2
(3)
P 		40.2
(2.2)
P 		14.1
(-3)
A 		30
C 20.1
(-1.2)
P 		47.7
(2.8)
P 		49
(3)
P 		7.8
(-3)
A 		41
avr 19.6
(-1.8) 		43.9
(2.2) 		48.5
(3) 		12.6
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 7.1
(-3)
A 		61.6
(-0)
P 		45.6
(-0.9)
P 		86
(1.3)
P 		117.6
(3)
P 		45
(-0.9)
P 		111
B 28.4
(-3)
A 		46.6
(-2.3)
P 		38.3
(-2.6)
P 		73.8
(-1.3)
P 		188.5
(3)
P 		59.4
(-1.8)
P 		160
C 14.2
(-3)
A 		56.4
(-0.9)
P 		43.4
(-1.6)
P 		72.1
(-0.1)
P 		135.1
(3)
P 		62.7
(-0.6)
P 		121
avr 16.6
(-3) 		54.9
(-1.2) 		42.4
(-1.8) 		77.3
(-0.2) 		147.1
(3) 		55.7
(-1.2) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5499
Sequence Type Exemplar sequence
Representative Public ID C17F4.5 NCBI
Target Description C17F4.5 /REP_DB=WormBase Gene ID /WP=CE27075 /TR=O16541 /GB=AAK31440.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062087
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C17F4.5 ENSEMBL cdna:known chromosome:CEL140:II:3246369:3248114:-1 gene:C17F4.5 A 
SNAP00000021557 ENSEMBL cdna:SNAP chromosome:CEL140:II:3246369:3248114:-1 None
NM_062087 NCBI Caenorhabditis elegans C17F4.5 (C17F4.5) mRNA, complete cds. A 
GENEFINDER00000021579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3245165:3248114:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026796 8/11 Cross Hyb Matching Probes None
SNAP00000021556 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021581 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3243685-3248113(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.5
Entrez Gene 173669 Entrez gene
SwissProt O16541 EMBL-EBI
WormBase CE27075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31440 Hypothetical protein C17F4.5 [Caenorhabditis elegans] ref|NP_494488.1| C17F4.5 [Caenorhabditis elegans] 0.0
blast T31924 hypothetical protein C17F4.5 - Caenorhabditis elegans 1.0E-125
blast T31924 hypothetical protein C17F4.5 - Caenorhabditis elegans 1.0E-123
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 1.0E-103
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 2.59999990463257
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:180378_AT
cacatctcttccaaattcccaaaagttcaatccgtgtcactttccaatttcccttttatc
tcaagattatcctatattgaaaaaaaaaccagaaaaacaaaaaacaacttattataaagt
taatattacattattcaacaactttccagctcaatatgcagaaaatagtcaaatcccaga
aatttcaaatttccctgaagccaattctattcaagaaaatcccacgacttatggcacccg
gccaactctgaaaatcccgttccaaatgatagtcacccctgattctaaatcactgcaatt
ctacaacccaatgcttgcctaccgggaggctactcaatccaatgagccacgtgtcatcgt
gtataactcggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATCTCTTCCAAATTCCCAAAAG 1 195 1122 Antisense
GTTCAATCCGTGTCACTTTCCAATT 569 445 1146 Antisense
TTTCCAATTTCCCTTTTATCTCAAG 91 617 1162 Antisense
AATTTCCCTGAAGCCAATTCTATTC 396 173 1309 Antisense
CAACTCTGAAAATCCCGTTCCAAAT 591 185 1364 Antisense
CCGTTCCAAATGATAGTCACCCCTG 443 263 1378 Antisense
GTCACCCCTGATTCTAAATCACTGC 304 465 1393 Antisense
ACTGCAATTCTACAACCCAATGCTT 250 97 1413 Antisense
AATGCTTGCCTACCGGGAGGCTACT 564 163 1431 Antisense
AATCCAATGAGCCACGTGTCATCGT 462 167 1457 Antisense
GTGTCATCGTGTATAACTCGGAGCT 268 487 1472 Antisense
Sequence Source Affymetrix Proprietary Database