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[180374_at]

Description F52E1.3 /REP_DB=WormBase Gene ID /WP=CE04631 /TR=Q20663 /GB=AAB37039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 44.8
(-0.7)
A 		20.1
(-3)
A 		85.7
(3)
A 		32.5
(-1.9)
A 		66
B 49
(-2)
A 		41.9
(-2.7)
A 		39.1
(-3)
A 		98.9
(3)
A 		60
C 50.8
(-1.5)
A 		52.5
(-1.3)
A 		30.6
(-3)
A 		108.9
(3)
A 		78
avr 48.2
(-1.6) 		38.2
(-3) 		51.8
(-1.1) 		80.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 65.4
(2)
A 		25.3
(-3)
A 		73.7
(3)
A 		41.1
(-1)
A 		61.7
(1.5)
A 		67.5
(2.2)
A 		48
B 52.6
(3)
A 		43.9
(1.4)
A 		47.1
(2)
A 		51.2
(2.7)
A 		32.1
(-0.7)
A 		19.2
(-3)
A 		33
C 50.3
(2.8)
A 		44.5
(1.7)
A 		48
(2.3)
A 		51.4
(3)
A 		41.6
(1.1)
A 		20.3
(-3)
A 		31
avr 56.1
(2.9) 		37.9
(-2.4) 		56.3
(3) 		47.9
(0.6) 		45.1
(-0.3) 		35.7
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.3
(1)
A 		4.4
(-3)
A 		22.4
(3)
A 		4.8
(-2.9)
A 		18
B 15.6
(0.3)
A 		10.3
(-2.4)
A 		9.1
(-3)
A 		21.1
(3)
A 		12
C 16.8
(1.8)
A 		15.1
(0.4)
A 		10.7
(-3)
A 		18.4
(3)
A 		8
avr 16.2
(3) 		9.9
(-3) 		14.1
(1) 		14.8
(1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.1
(-1.1)
A 		9
(-3)
A 		16
(1.4)
A 		10.4
(-2.1)
A 		18.6
(3)
A 		16.4
(1.6)
A 		10
B 18.3
(3)
A 		14.6
(1)
A 		11.4
(-0.7)
A 		13.6
(0.5)
A 		13
(0.1)
A 		7.2
(-3)
A 		11
C 18.6
(3)
A 		13.6
(0.5)
A 		12.2
(-0.3)
A 		10.3
(-1.2)
A 		13.4
(0.4)
A 		6.8
(-3)
A 		12
avr 16.3
(3) 		12.4
(-0.8) 		13.2
(-0) 		11.4
(-1.7) 		15
(1.7) 		10.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11796
Sequence Type Exemplar sequence
Representative Public ID F52E1.3 NCBI
Target Description F52E1.3 /REP_DB=WormBase Gene ID /WP=CE04631 /TR=Q20663 /GB=AAB37039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072767 NCBI Caenorhabditis elegans F52E1.3 (F52E1.3) mRNA, complete cds. 11/11 None
SNAP00000034424 ENSEMBL cdna:SNAP chromosome:CEL140:V:8397390:8398859:1 11/11 None
GENEFINDER00000034437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8397390:8399439:1 11/11 None
F52E1.3 ENSEMBL cdna:known chromosome:CEL140:V:8397390:8398934:1 gene:F52E1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8397390-8398935(+) 94.86 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E1.3
Entrez Gene 186112 Entrez gene
SwissProt Q20663 EMBL-EBI
WormBase CE04631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37039 Hypothetical protein F52E1.3 [Caenorhabditis elegans] ref|NP_505168.1| F52E1.3 [Caenorhabditis elegans] 1.0E-106
blast AAB37039 Hypothetical protein F52E1.3 [Caenorhabditis elegans] ref|NP_505168.1| F52E1.3 [Caenorhabditis elegans] 1.0E-102
blast AAB37039 Hypothetical protein F52E1.3 [Caenorhabditis elegans] ref|NP_505168.1| F52E1.3 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:180374_AT
tatcacgctacggcttgtcgaagaacgcacctttttcctagtgaaatgactggaacatcc
gaagaaaagatggatgaagttccagatgctatgaaaaatttgaatatttcaatttccaga
caaggatgtgttgaacctcaagatctctacactagcgaagtcgccagagggccaacaccg
agaccagttggggatcatccacaaacgtcgagtgaagaacaaattgaagcaactccatac
ccaactattccaaaagaacaagccgatcggattgacagagagttgctcagattaaaatta
aaaatagcaaaagaggaggatgaaaagagacaaagagagaaagaagaactaaagaaactc
agaccaaaacgaggatcttttatttataatatctttttgacaaatccaaaccacaccgtt
tcaacatcagatgattccaatccgaacattgaatcaggtgcaacttcggttggaccaaca
ccgcgaacaacagctcaagcaaaagaatcaccacaggaactaaatccttcagatctcaac
aaacctccggttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCACGCTACGGCTTGTCGAAGAA 25 659 130 Antisense
GAAGAACGCACCTTTTTCCTAGTGA 145 337 149 Antisense
GAACCTCAAGATCTCTACACTAGCG 491 345 262 Antisense
TAGCGAAGTCGCCAGAGGGCCAACA 553 651 282 Antisense
ACACCGAGACCAGTTGGGGATCATC 522 109 304 Antisense
GGGGATCATCCACAAACGTCGAGTG 283 497 319 Antisense
ATTGAAGCAACTCCATACCCAACTA 145 5 352 Antisense
AACCACACCGTTTCAACATCAGATG 488 147 538 Antisense
TCGGTTGGACCAACACCGCGAACAA 366 595 595 Antisense
GGAACTAAATCCTTCAGATCTCAAC 21 529 645 Antisense
GATCTCAACAAACCTCCGGTTGGCA 532 415 661 Antisense
Sequence Source Affymetrix Proprietary Database