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[180373_at]

Description C35E7.1 /REP_DB=WormBase Gene ID /WP=CE28389 /TR=O61775 /GB=AAC17517.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 55      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 53.7
(3)
A 		37.4
(-3)
A 		52
(2.4)
A 		40.5
(-1.9)
A 		16
B 66.7
(3)
A 		26
(-1.5)
A 		49.1
(1)
A 		12.7
(-3)
A 		54
C 45
(1.4)
A 		10.1
(-3)
A 		16.8
(-2.2)
A 		57.7
(3)
A 		48
avr 55.1
(3) 		24.5
(-3) 		39.3
(-0.1) 		37
(-0.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 59.4
(-1.5)
A 		77.1
(-0.7)
A 		35.5
(-2.5)
A 		24.9
(-3)
A 		92
(-0)
A 		160.8
(3)
P 		136
B 41.4
(-2.1)
A 		10
(-3)
A 		63.8
(-1.5)
A 		35.4
(-2.3)
A 		53.9
(-1.7)
A 		220.1
(3)
P 		210
C 63.6
(-1.8)
A 		40.2
(-3)
A 		40.9
(-3)
A 		64
(-1.8)
A 		61.9
(-1.9)
A 		158.9
(3)
P 		119
avr 54.8
(-2.4) 		42.4
(-3) 		46.7
(-2.8) 		41.4
(-3) 		69.3
(-1.8) 		179.9
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.5
(3)
A 		8.1
(-2)
A 		13.6
(0.4)
A 		5.9
(-3)
A 		14
B 21.3
(3)
A 		6.4
(-1.8)
A 		11.4
(-0.2)
A 		2.7
(-3)
A 		19
C 14.9
(3)
A 		2.9
(-3)
A 		5.8
(-1.6)
A 		9.7
(0.4)
A 		12
avr 18.6
(3) 		5.8
(-3) 		10.3
(-0.9) 		6.1
(-2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 11
(-2.1)
A 		27.4
(0.9)
A 		7.7
(-2.7)
A 		6.3
(-3)
A 		27.8
(0.9)
A 		39.1
(3)
P 		33
B 14.4
(-2.2)
A 		3.3
(-3)
A 		15.5
(-2.1)
A 		9.4
(-2.5)
A 		21.9
(-1.6)
A 		82.1
(3)
P 		79
C 23.6
(-1.1)
A 		12.3
(-2.7)
A 		10.4
(-3)
A 		12.9
(-2.6)
A 		20
(-1.7)
A 		53.2
(3)
P 		43
avr 16.3
(-2.2) 		14.3
(-2.4) 		11.2
(-2.8) 		9.5
(-3) 		23.2
(-1.3) 		58.1
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2293
Sequence Type Exemplar sequence
Representative Public ID C35E7.1 NCBI
Target Description C35E7.1 /REP_DB=WormBase Gene ID /WP=CE28389 /TR=O61775 /GB=AAC17517.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060435(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060435 NCBI Caenorhabditis elegans C35E7.1 (C35E7.1) mRNA, complete cds. 10/11 A 
C35E7.1 ENSEMBL cdna:known chromosome:CEL140:I:10854899:10858502:1 gene:C35E7.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10854829-10857150(+) 98.68 98.68
Public Domain and Genome References
Gene Title
Ensembl C35E7.1
Entrez Gene 172993 Entrez gene
SwissProt O61775 EMBL-EBI
WormBase CE36273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17517 Hypothetical protein C35E7.1 [Caenorhabditis elegans] ref|NP_492836.3| C35E7.1 [Caenorhabditis elegans] 0.0
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 7.0E-17
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:180373_AT
ggaggatcattcgaaggacttccagaaagaccagaaaatggattttcatttgaaactgaa
aaagagcaatctgcatcgactggttcagaatcacacgatgagcaggaaactgtaattgaa
agcgaatcaataactgatttcctttcacgaattctaggagaagattggcttactccaaag
ccgctatctacaacttaccagaaaccattgaaaaaatccagtgtccatgatgaatctgct
gacgagattgaccttatattagctaagaaatcgaagcgcacagctgtaccaactatttct
aaatctgatgaagttgagaatgtagatcctccaaaagaatatggaaatctcgaagtagat
catgaagccatgcttcaccagagaccactgaggaaagttgcggttgtccagcgggaatcc
gaatctgcttacgaatctgagcaaggatcagatggagaaacatcggaagaatcattttta
gaaagagcttctttatttgacgaatatgatagaatgattgaaattctggcagaagaatat
gatacacctgacgagcaaactccatgcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATCATTCGAAGGACTTCCAG 269 515 1150 Antisense
GAGCAATCTGCATCGACTGGTTCAG 450 389 1213 Antisense
AACTGATTTCCTTTCACGAATTCTA 103 143 1281 Antisense
GATTGGCTTACTCCAAAGCCGCTAT 262 435 1312 Antisense
CAAAGCCGCTATCTACAACTTACCA 592 191 1325 Antisense
GTGTCCATGATGAATCTGCTGACGA 64 485 1370 Antisense
CGCACAGCTGTACCAACTATTTCTA 404 253 1426 Antisense
CCATGCTTCACCAGAGACCACTGAG 31 273 1517 Antisense
AAAGTTGCGGTTGTCCAGCGGGAAT 77 121 1543 Antisense
GCGGGAATCCGAATCTGCTTACGAA 60 293 1560 Antisense
CTGACGAGCAAACTCCATGCACCAA 211 239 1697 Antisense
Sequence Source Affymetrix Proprietary Database