[Home] | [Total List]

[180372_at]

Description C52E2.2 /REP_DB=WormBase Gene ID /WP=CE20597 /TR=Q9N4K6 /GB=AAF35428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 3.9
(-3)
A 		6.9
(-2.9)
A 		8.6
(-2.9)
A 		335.2
(3)
P 		331
B 10.3
(-2.9)
A 		30
(-2.5)
A 		5.2
(-3)
A 		326.8
(3)
P 		322
C 10.7
(-2.9)
A 		22.8
(-2.7)
A 		3.8
(-3)
A 		372.3
(3)
P 		369
avr 8.3
(-3) 		19.9
(-2.8) 		5.9
(-3) 		344.8
(3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 12.4
(-2.6)
A 		3.5
(-3)
A 		7.4
(-2.8)
A 		5.6
(-2.9)
A 		26.5
(-1.9)
A 		129.3
(3)
P 		126
B 3
(-3)
A 		1.4
(-3)
A 		5.1
(-2.9)
A 		40.9
(-1.9)
A 		68.8
(-1.1)
P 		213.8
(3)
P 		212
C 23.5
(-2.2)
A 		8
(-2.9)
A 		6.5
(-3)
A 		37.9
(-1.6)
A 		64.1
(-0.4)
A 		139.8
(3)
P 		133
avr 13
(-2.7) 		4.3
(-3) 		6.3
(-2.9) 		28.1
(-2.1) 		53.1
(-1.1) 		161
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 1.4
(-3)
A 		1.5
(-3)
A 		2.2
(-2.9)
A 		49.1
(3)
P 		48
B 3.3
(-2.8)
A 		7.4
(-2.5)
A 		1.2
(-3)
A 		69.6
(3)
P 		68
C 3.6
(-2.8)
A 		6.6
(-2.5)
A 		1.3
(-3)
A 		62.8
(3)
P 		62
avr 2.8
(-2.9) 		5.2
(-2.6) 		1.6
(-3) 		60.5
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 2.3
(-2.8)
A 		1.2
(-3)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		8
(-1.7)
A 		31.5
(3)
P 		30
B 1.1
(-3)
A 		0.5
(-3)
A 		1.2
(-2.9)
A 		10.8
(-2.2)
A 		27.9
(-0.9)
P 		79.7
(3)
P 		79
C 8.7
(-2.1)
A 		2.5
(-2.9)
A 		1.7
(-3)
A 		7.6
(-2.2)
A 		20.7
(-0.5)
A 		46.8
(3)
P 		45
avr 4
(-2.7) 		1.4
(-3) 		1.5
(-3) 		6.6
(-2.4) 		18.9
(-1) 		52.7
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5475
Sequence Type Exemplar sequence
Representative Public ID C52E2.2 NCBI
Target Description C52E2.2 /REP_DB=WormBase Gene ID /WP=CE20597 /TR=Q9N4K6 /GB=AAF35428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061695 NCBI Caenorhabditis elegans C52E2.2 (C52E2.2) mRNA, complete cds. 11/11 None
SNAP00000007513 ENSEMBL cdna:SNAP chromosome:CEL140:II:1852810:1853076:1 11/11 None
GENEFINDER00000007519 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1852810:1853076:1 11/11 None
C52E2.2 ENSEMBL cdna:known chromosome:CEL140:II:1852810:1853076:1 gene:C52E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1852808-1853075(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E2.2
Entrez Gene 183724 Entrez gene
SwissProt Q9N4K6 EMBL-EBI
WormBase CE20597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35428 Hypothetical protein C52E2.2 [Caenorhabditis elegans] ref|NP_494096.1| C52E2.2 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180372_AT
agctttggattgtctcaaggctctccagcagctggttctgcagcgcctacaggaggggtt
aatgctggagtagatgtaaacgctgaaattgaggatccggaaacgggactttttgtcgga
atacttggcagtggtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTTGGATTGTCTCAAGGCTCTC 136 79 58 Antisense
CAAGGCTCTCCAGCAGCTGGTTCTG 673 183 73 Antisense
CTCTCCAGCAGCTGGTTCTGCAGCG 386 231 78 Antisense
TCTGCAGCGCCTACAGGAGGGGTTA 681 607 94 Antisense
GCAGCGCCTACAGGAGGGGTTAATG 328 295 97 Antisense
GGAGGGGTTAATGCTGGAGTAGATG 244 497 109 Antisense
ATGCTGGAGTAGATGTAAACGCTGA 57 3 119 Antisense
GTAAACGCTGAAATTGAGGATCCGG 322 457 133 Antisense
CTGAAATTGAGGATCCGGAAACGGG 95 1 140 Antisense
GGACTTTTTGTCGGAATACTTGGCA 62 525 163 Antisense
TGTCGGAATACTTGGCAGTGGTTTC 530 557 171 Antisense
Sequence Source Affymetrix Proprietary Database