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[180370_at]

Description K02F3.3 /REP_DB=WormBase Gene ID /WP=CE01349 /TR=Q21152 /GB=AAK21422.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 24      6grp_total > 20      4grp_total > 17      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4198
1 2 3 4 range
A 2618.2
(-3)
P 		4138.6
(-0.3)
P 		3700.6
(-1.1)
P 		6005.2
(3)
P 		3387
B 2341.9
(-3)
P 		3926.9
(-0.7)
P 		3864.1
(-0.8)
P 		6540.3
(3)
P 		4198
C 2421.9
(-3)
P 		3299.6
(-1.2)
P 		3773.1
(-0.3)
P 		5421
(3)
P 		2999
avr 2460.7
(-3) 		3788.4
(-0.7) 		3779.3
(-0.8) 		5988.8
(3) 		3528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2178
1 2 3 4 5 6 range
A 3284.1
(-0)
P 		3973.1
(2)
P 		4330.7
(3)
P 		3090.1
(-0.6)
P 		2238.4
(-3)
P 		2914.9
(-1.1)
P 		2092
B 2830.8
(-0.9)
P 		3930.9
(2.6)
P 		4070.9
(3)
P 		3396.6
(0.9)
P 		2153.1
(-3)
P 		3057.2
(-0.2)
P 		1918
C 2601.8
(-2.1)
P 		4259.4
(3)
P 		4035.2
(2.3)
P 		4000.1
(2.2)
P 		2313.6
(-3)
P 		3613.6
(1)
P 		1946
avr 2905.6
(-0.9) 		4054.5
(2.7) 		4145.6
(3) 		3495.6
(1) 		2235
(-3) 		3195.2
(0) 		1911
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 647
1 2 3 4 range
A 953.3
(2)
P 		898.4
(-1.7)
P 		967.4
(3)
P 		879
(-3)
P 		88
B 746.8
(-3)
P 		969.9
(-0.9)
P 		895.4
(-1.6)
P 		1393.7
(3)
P 		647
C 801.7
(-3)
P 		948.7
(-1.3)
P 		1315.1
(3)
P 		914.1
(-1.7)
P 		513
avr 833.9
(-3) 		939
(-0.2) 		1059.3
(2.9) 		1062.3
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 808
1 2 3 4 5 6 range
A 605.4
(-3)
P 		1413
(3)
P 		943.1
(-0.5)
P 		783.7
(-1.7)
P 		675.5
(-2.5)
P 		709.7
(-2.2)
P 		808
B 985
(-1.5)
P 		1308.4
(3)
P 		988.5
(-1.4)
P 		899.6
(-2.7)
P 		874.8
(-3)
P 		1140
(0.7)
P 		434
C 964.4
(-0.7)
P 		1299.7
(3)
P 		1027
(0)
P 		804.4
(-2.4)
P 		748.6
(-3)
P 		1209.7
(2)
P 		551
avr 851.6
(-2.1) 		1340.4
(3) 		986.2
(-0.7) 		829.2
(-2.3) 		766.3
(-3) 		1019.8
(-0.4) 		574
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8133
Sequence Type Exemplar sequence
Representative Public ID K02F3.3 NCBI
Target Description K02F3.3 /REP_DB=WormBase Gene ID /WP=CE01349 /TR=Q21152 /GB=AAK21422.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064872 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-8) (far-8) mRNA, complete cds. 11/11 None
SNAP00000008339 ENSEMBL cdna:SNAP chromosome:CEL140:III:842942:843731:1 11/11 None
GENEFINDER00000008346 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:842942:843731:1 11/11 None
K02F3.3 ENSEMBL cdna:known chromosome:CEL140:III:842926:843751:1 gene:K02F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:842532-843731(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol far-8
Ensembl K02F3.3
Entrez Gene 186902 Entrez gene
SwissProt Q21152 EMBL-EBI
WormBase CE34046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21422 Fatty acid/retinol binding protein protein 8 [Caenorhabditis elegans] ref|NP_497273.2| Fatty Acid/Retinol binding protein family member (far-8) [Caenorhabditis elegans] 1.0E-130
blast CAE56472 Hypothetical protein CBG24186 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:180370_AT
acaaacaattcatgccttcttacgttctggaaccacttgataacatcaccgacgaacaga
aaactcaggcagttcagatggtgaatgactatcacgcaggcaagtttgagccgaagaact
acgatgagtacatcgcaatcatgaagaagagctatccagcattggcaggtccatatgaga
caatgtacaacaagtacaaagaacaggttgccaaattgggaccaaagggacaagaatatt
gcaatgggctcgaagctcaaatgtacaccgatgcctcccctgaccgtgttgtctgggctt
gccatatcttcaacaatgccaagtccgcagttagtggagcaaaagctcttcttcaggatg
attcggaagcggcaaagattgaagaagcattcccagaggctgtgaaacttcttaatagca
aaaaatttgaagcctactcgattatcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAACAATTCATGCCTTCTTACGT 82 113 329 Antisense
TGCCTTCTTACGTTCTGGAACCACT 575 583 341 Antisense
GGAACCACTTGATAACATCACCGAC 20 531 357 Antisense
GACTATCACGCAGGCAAGTTTGAGC 429 371 415 Antisense
GAGCTATCCAGCATTGGCAGGTCCA 179 389 477 Antisense
AAGCTCAAATGTACACCGATGCCTC 375 149 581 Antisense
GTTGTCTGGGCTTGCCATATCTTCA 567 437 616 Antisense
AACAATGCCAAGTCCGCAGTTAGTG 699 133 640 Antisense
AAAGCTCTTCTTCAGGATGATTCGG 277 125 670 Antisense
GAAGCATTCCCAGAGGCTGTGAAAC 695 341 712 Antisense
ATTTGAAGCCTACTCGATTATCGTT 139 17 753 Antisense
Sequence Source Affymetrix Proprietary Database