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[180369_at]

Description C17E7.4 /REP_DB=WormBase Gene ID /WP=CE08264 /TR=O16393 /GB=AAC24273.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 8.3
(-2.4)
A 		5
(-3)
A 		10.1
(-2.1)
A 		39.8
(3)
A 		35
B 6.6
(-3)
A 		12.7
(-0.9)
A 		9.8
(-1.9)
A 		23.7
(3)
A 		17
C 80.7
(3)
A 		42.7
(-0.1)
A 		6.6
(-3)
A 		54.1
(0.8)
P 		74
avr 31.9
(1.6) 		20.1
(-0.8) 		8.8
(-3) 		39.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 66.1
(-2)
A 		28.8
(-2.6)
A 		59.7
(-2.1)
A 		7.2
(-3)
A 		154.3
(-0.4)
P 		348.4
(3)
P 		341
B 22.3
(-2.7)
A 		8.4
(-3)
A 		6.6
(-3)
A 		35.7
(-2.5)
A 		122.8
(-1)
P 		354.4
(3)
P 		348
C 7.2
(-3)
A 		16.5
(-2.9)
A 		9
(-3)
A 		38.5
(-2.5)
A 		147.3
(-0.8)
P 		387
(3)
P 		380
avr 31.9
(-2.8) 		17.9
(-3) 		25.1
(-2.9) 		27.1
(-2.8) 		141.5
(-0.9) 		363.3
(3) 		345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3
(-0.6)
A 		1.1
(-3)
A 		2.6
(-1.1)
A 		5.8
(3)
A 		5
B 2.1
(-3)
A 		3.1
(-1)
A 		2.3
(-2.6)
A 		5.1
(3)
A 		3
C 26.7
(3)
A 		12.3
(-0.5)
A 		2.3
(-3)
A 		9.1
(-1.3)
P 		24
avr 10.6
(3) 		5.5
(-0.7) 		2.4
(-3) 		6.7
(0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 12.2
(-2.2)
A 		10.3
(-2.4)
A 		13
(-2.2)
A 		1.8
(-3)
A 		46.6
(0.2)
P 		84.8
(3)
P 		83
B 7.7
(-2.7)
A 		2.8
(-2.9)
A 		1.6
(-3)
A 		9.5
(-2.6)
A 		49.9
(-0.8)
P 		132.1
(3)
P 		131
C 2.7
(-3)
A 		5
(-2.9)
A 		2.3
(-3)
A 		7.7
(-2.7)
A 		47.7
(-0.9)
P 		129.6
(3)
P 		127
avr 7.5
(-2.9) 		6
(-3) 		5.6
(-3) 		6.3
(-3) 		48.1
(-0.7) 		115.5
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15130
Sequence Type Exemplar sequence
Representative Public ID C17E7.4 NCBI
Target Description C17E7.4 /REP_DB=WormBase Gene ID /WP=CE08264 /TR=O16393 /GB=AAC24273.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071674 NCBI Caenorhabditis elegans C17E7.4 (C17E7.4) mRNA, complete cds. 11/11 None
SNAP00000014090 ENSEMBL cdna:SNAP chromosome:CEL140:V:3892672:3894307:1 11/11 None
GENEFINDER00000014105 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3892672:3894307:1 11/11 None
C17E7.4 ENSEMBL cdna:known chromosome:CEL140:V:3892667:3894338:1 gene:C17E7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3892671-3894307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E7.4
Entrez Gene 178801 Entrez gene
SwissProt O16393 EMBL-EBI
WormBase CE08264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24273 Hypothetical protein C17E7.4 [Caenorhabditis elegans] ref|NP_504075.1| C17E7.4 [Caenorhabditis elegans] 0.0
blast CAE62406 Hypothetical protein CBG06493 [Caenorhabditis briggsae] 1.0E-70
blast CAI46602 Hypothetical protein F54D5.5b [Caenorhabditis elegans] ref|NP_001022203.1| F54D5.5b [Caenorhabditis elegans] 1.0E-39
Sequence
Target Sequence 
>C. ELEGANS:180369_AT
tggcctattgtatggcgtcggctcaacaactggagcagttgaaaaaggaacgagaccagt
acaagaaggagatgagacggtataaggcaaaatgtgagcaattggagagcaagtgcgagc
aactacagaccatgtctccgagctatggcgcatttcagtctatgcaaaatctccaaaatc
caatgctgccatctccattccaaactccacaatttcctgctccacgaagcttcgcctatc
ccaacccgccacttccatttcatcgttccatggattttctcaatagtggaccgccaagct
acctgtacaatgagaacctatcttcgctgtgcagcagctcgatgagccacacgccgacga
caaacgggagcgatggcgccggcgaatcacttgttaatccgtcggacgtcagttttctca
agaacttttctaatggtcccacaaattcctacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCTATTGTATGGCGTCGGCTCA 264 539 569 Antisense
ACAGACCATGTCTCCGAGCTATGGC 527 107 693 Antisense
GAGCTATGGCGCATTTCAGTCTATG 551 387 708 Antisense
ATCTCCAAAATCCAATGCTGCCATC 645 33 737 Antisense
CCACTTCCATTTCATCGTTCCATGG 310 275 817 Antisense
CAATAGTGGACCGCCAAGCTACCTG 240 179 849 Antisense
AATGAGAACCTATCTTCGCTGTGCA 679 163 877 Antisense
GCTGTGCAGCAGCTCGATGAGCCAC 114 293 894 Antisense
GACAAACGGGAGCGATGGCGCCGGC 634 363 927 Antisense
GAATCACTTGTTAATCCGTCGGACG 115 327 952 Antisense
AATGGTCCCACAAATTCCTACGACA 683 161 1000 Antisense
Sequence Source Affymetrix Proprietary Database