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[180368_at]

Description T11F9.10 /REP_DB=WormBase Gene ID /WP=CE06422 /TR=Q22394 /GB=CAA98526.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 81.3
(-0)
P 		69.9
(-1.4)
A 		56.8
(-3)
A 		106.6
(3)
P 		50
B 38.2
(-3)
A 		50.7
(-1.8)
A 		73
(0.3)
A 		102.3
(3)
P 		64
C 26.5
(-3)
A 		48.5
(0)
A 		50.3
(0.2)
A 		70.5
(3)
P 		44
avr 48.7
(-3) 		56.4
(-2) 		60
(-1.5) 		93.1
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 48.2
(-0.7)
A 		45.2
(-1.2)
P 		35.4
(-3)
M 		68.1
(3)
P 		66.3
(2.7)
P 		40.3
(-2.1)
A 		33
B 34.6
(-1.6)
A 		20.3
(-3)
A 		30.7
(-2)
A 		44.5
(-0.7)
P 		83.6
(3)
P 		44.6
(-0.7)
P 		63
C 24.1
(-3)
A 		33.3
(-2.3)
A 		61
(-0.2)
P 		77.6
(1)
P 		104
(3)
P 		43.3
(-1.6)
P 		80
avr 35.6
(-2.7) 		32.9
(-3) 		42.4
(-1.9) 		63.4
(0.5) 		84.6
(3) 		42.7
(-1.9) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 29.6
(3)
P 		15.2
(-2.9)
A 		14.9
(-3)
A 		15.6
(-2.7)
P 		15
B 12.2
(-3)
A 		12.5
(-2.8)
A 		16.9
(-0.1)
A 		21.8
(3)
P 		10
C 8.8
(-3)
A 		13.9
(0.5)
A 		17.5
(3)
A 		11.9
(-0.9)
P 		9
avr 16.9
(3) 		13.9
(-3) 		16.4
(2) 		16.4
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.9
(-2.4)
A 		16.1
(1.1)
P 		7.7
(-3)
M 		17.3
(1.7)
P 		20
(3)
P 		9.8
(-2)
A 		12
B 12
(-1.8)
A 		6.7
(-3)
A 		7.5
(-2.8)
A 		11.8
(-1.9)
P 		33.9
(3)
P 		16.6
(-0.8)
P 		27
C 8.9
(-3)
A 		10.2
(-2.7)
A 		15.5
(-1.4)
P 		15.6
(-1.4)
P 		33.7
(3)
P 		14.5
(-1.6)
P 		25
avr 9.9
(-3) 		11
(-2.7) 		10.2
(-2.9) 		14.9
(-1.4) 		29.2
(3) 		13.6
(-1.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14213
Sequence Type Exemplar sequence
Representative Public ID T11F9.10 NCBI
Target Description T11F9.10 /REP_DB=WormBase Gene ID /WP=CE06422 /TR=Q22394 /GB=CAA98526.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073513 NCBI Caenorhabditis elegans T11F9.10 (T11F9.10) mRNA, complete cds. 11/11 None
SNAP00000013929 ENSEMBL cdna:SNAP chromosome:CEL140:V:11489740:11490863:1 11/11 None
GENEFINDER00000013934 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11489765:11490863:1 11/11 None
T11F9.10 ENSEMBL cdna:known chromosome:CEL140:V:11489154:11490863:1 gene:T11F9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11490265-11490863(+) 10.12 61.15
Public Domain and Genome References
Gene Title
Ensembl T11F9.10
Entrez Gene 188427 Entrez gene
SwissProt Q22394 EMBL-EBI
WormBase CE06422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98526 Hypothetical protein T11F9.10 [Caenorhabditis elegans] ref|NP_505914.1| T11F9.10 [Caenorhabditis elegans] 1.0E-168
blast CAA98526 Hypothetical protein T11F9.10 [Caenorhabditis elegans] ref|NP_505914.1| T11F9.10 [Caenorhabditis elegans] 1.0E-126
blast CAB04361 Hypothetical protein F40D4.13 [Caenorhabditis elegans] ref|NP_507339.1| F40D4.13 [Caenorhabditis elegans] 2.0E-92
blast CAB04361 Hypothetical protein F40D4.13 [Caenorhabditis elegans] ref|NP_507339.1| F40D4.13 [Caenorhabditis elegans] 1.0E-89
Sequence
Target Sequence 
>C. ELEGANS:180368_AT
caccattcggagtcccattgttggatagtggctcagccactgctggaactcaactcgtca
tgtttggatctctggtgaaactcttggagagctcaaagcaaactaccagcgacaacaata
cagccgtcggtctaataaaatccattaatggatcgctgaaatcgattgtagacggggaga
agacggccaacaatgcctggagagaatctaccattgtgatgctcagcaaggagttgaaaa
agctggaattggctcggctcgaagacaaggaggtgcagaaggacaattggacccgcttcc
atgaatgggctgacaaattgaagaagaacaatgacggggagactgaaaaaactggttcaa
cttcaagagttccatgcctgttgaagagaggaagctcggaaacggtcgacgcggtcaaat
tcggatcgaaaaacgcgggattgactcctaaggagaagatcttagctgcccaagcagcca
atg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCATTCGGAGTCCCATTGTTGGA 530 201 401 Antisense
GGAGAAGACGGCCAACAATGCCTGG 448 495 576 Antisense
GAATCTACCATTGTGATGCTCAGCA 656 325 604 Antisense
ATTGGCTCGGCTCGAAGACAAGGAG 581 3 648 Antisense
GTGCAGAAGGACAATTGGACCCGCT 498 461 673 Antisense
GACCCGCTTCCATGAATGGGCTGAC 262 381 690 Antisense
AACTTCAAGAGTTCCATGCCTGTTG 27 139 759 Antisense
GAGGAAGCTCGGAAACGGTCGACGC 556 403 788 Antisense
ACGGTCGACGCGGTCAAATTCGGAT 664 93 802 Antisense
AACGCGGGATTGACTCCTAAGGAGA 175 141 832 Antisense
ATCTTAGCTGCCCAAGCAGCCAATG 212 31 859 Antisense
Sequence Source Affymetrix Proprietary Database