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[180366_s_at]

Description ZK770.3 /REP_DB=WormBase Gene ID /WP=CE15413 /TR=O01634 /GB=AAB93310.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 03      6grp_total > 23      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3762
1 2 3 4 range
A 4562.1
(3)
P 		3985.9
(2.1)
P 		3816.7
(1.8)
P 		854.7
(-3)
P 		3707
B 3536.3
(1.1)
P 		4616.7
(3)
P 		3861.4
(1.7)
P 		1219.7
(-3)
P 		3397
C 4124.9
(2.3)
P 		4515.8
(3)
P 		4078.4
(2.2)
P 		1198.2
(-3)
P 		3318
avr 4074.4
(2.5) 		4372.8
(3) 		3918.8
(2.2) 		1090.9
(-3) 		3282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3888
1 2 3 4 5 6 range
A 4282.5
(3)
P 		3609.3
(1.6)
P 		3283.5
(0.9)
P 		2558.2
(-0.6)
P 		2296.9
(-1.2)
P 		1428.5
(-3)
P 		2854
B 5316
(3)
P 		4021.3
(0.9)
P 		4357.5
(1.5)
P 		3286.6
(-0.2)
P 		2196.8
(-2)
P 		1553.7
(-3)
P 		3762
C 4276.3
(3)
P 		3762.4
(1.8)
P 		3132
(0.4)
P 		3009.8
(0.1)
P 		2086.5
(-2)
P 		1649.2
(-3)
P 		2627
avr 4624.9
(3) 		3797.7
(1.4) 		3591
(1) 		2951.5
(-0.3) 		2193.4
(-1.7) 		1543.8
(-3) 		3081
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1536
1 2 3 4 range
A 1661.1
(3)
P 		865.2
(-0.1)
P 		997.8
(0.4)
P 		125.1
(-3)
P 		1536
B 1127.7
(2.9)
P 		1140.2
(3)
P 		894.8
(1.3)
P 		259.9
(-3)
P 		880
C 1365.5
(2.7)
P 		1298.3
(2.4)
P 		1421.5
(3)
P 		202
(-3)
P 		1220
avr 1384.8
(3) 		1101.2
(1.6) 		1104.7
(1.6) 		195.7
(-3) 		1189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1502
1 2 3 4 5 6 range
A 789.4
(-0.2)
P 		1283.6
(3)
P 		715.1
(-0.6)
P 		648.8
(-1.1)
P 		693.1
(-0.8)
P 		347.8
(-3)
P 		936
B 1849.7
(3)
P 		1338.5
(0.6)
P 		1058.1
(-0.7)
P 		870.5
(-1.6)
P 		892.5
(-1.5)
P 		579.4
(-3)
P 		1270
C 1585
(3)
P 		1148
(0.5)
P 		797.2
(-1.6)
P 		605.3
(-2.7)
P 		675.2
(-2.3)
P 		552.1
(-3)
P 		1033
avr 1408
(3) 		1256.7
(2) 		856.8
(-0.6) 		708.2
(-1.6) 		753.6
(-1.3) 		493.1
(-3) 		915
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180366_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.165
Sequence Type Exemplar sequence
Representative Public ID ZK770.3 NCBI
Target Description ZK770.3 /REP_DB=WormBase Gene ID /WP=CE15413 /TR=O01634 /GB=AAB93310.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058812 NCBI Caenorhabditis elegans INneXin family member (inx-12) (inx-12) mRNA, complete cds. 11/11 None
SNAP00000037498 ENSEMBL cdna:SNAP chromosome:CEL140:I:3755605:3758993:-1 11/11 None
GENEFINDER00000037501 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3755605:3758993:-1 11/11 None
ZK770.3.1 ENSEMBL cdna:known chromosome:CEL140:I:3755506:3759047:-1 gene:ZK770.3 11/11 None
ZK770.3.2 ENSEMBL cdna:known chromosome:CEL140:I:3755507:3759048:-1 gene:ZK770.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3755604-3758993(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-12
Ensembl ZK770.3
Entrez Gene 171944 Entrez gene
SwissProt O01634 EMBL-EBI
WormBase CE15413 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
15286 innexin channel activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93310 Innexin protein 12 [Caenorhabditis elegans] ref|NP_491213.1| INneXin family member (inx-12) [Caenorhabditis elegans] sp|O01634|INX12_CAEEL Innexin-12 0.0
blast CAE66659 Hypothetical protein CBG11996 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 4.2E-94
Pfam IPR000990 EMBL-EBI Innexin 2.6E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491213.1 4 23-45,114-136,197-219,286-308
ZK770.3.1 4 23-45,114-136,197-219,286-308
ZK770.3.2 4 23-45,114-136,197-219,286-308
SNAP00000037498 4 23-45,114-136,197-219,286-308
GENEFINDER00000037501 4 23-45,114-136,249-268,329-351
Sequence
Target Sequence 
>C. ELEGANS:180366_S_AT
agccctattcttgatcaacgttctcttccaattcgtgcttctcaagagaatgttgggagt
ggattcatatttctggggagccgaagtgacctccgatttatggtctggaaatgaatggcc
tgaaacaggaaacttcccgcgtgttacaatgtgcgagtacgaggttcgaaatctggataa
tattcataagcattcggtacaatgcgttctcatgatcaatatgttcaatgagaagatctt
tgttgcactttggtggtggttgtgcttcttgacagttgtcacaattaccaacactattta
ctggttctggagagcttctggaacgtcggtctccaagaatttcattcgaccatatgtgga
agatattgatccaaaagtgaagaataatagaggaaaacttcaacaattcgtctccgaatt
cctatccccagatactgtattcattcttcgactaattgaattaaataacggaaagacacc
tgttgtcgagctgattcgtgacatgtggcgacgtttcaacacagccgtaccgccaccata
ttcggctccaccgcttctcgtaaaggacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCCTATTCTTGATCAACGTTCTC 237 83 627 Antisense
CTCTTCCAATTCGTGCTTCTCAAGA 499 229 649 Antisense
AGCCGAAGTGACCTCCGATTTATGG 280 1 705 Antisense
ACTTCCCGCGTGTTACAATGTGCGA 44 103 758 Antisense
GGTTGTGCTTCTTGACAGTTGTCAC 638 507 884 Antisense
GGAGAGCTTCTGGAACGTCGGTCTC 482 519 935 Antisense
GAATTCCTATCCCCAGATACTGTAT 648 323 1042 Antisense
GATACTGTATTCATTCTTCGACTAA 633 423 1057 Antisense
GACACCTGTTGTCGAGCTGATTCGT 607 367 1101 Antisense
ATGTGGCGACGTTTCAACACAGCCG 409 49 1129 Antisense
CTCCACCGCTTCTCGTAAAGGACGG 574 213 1172 Antisense
Sequence Source Affymetrix Proprietary Database