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[180365_at]

Description C48B6.3 /REP_DB=WormBase Gene ID /WP=CE08805 /TR=O01512 /GB=AAC48163.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 66.4
(-1.1)
A 		8.5
(-3)
A 		23.7
(-2.5)
A 		188.1
(3)
A 		180
B 76.3
(0.2)
A 		35.3
(-3)
A 		40.1
(-2.6)
A 		112
(3)
P 		77
C 116
(1.2)
M 		23.2
(-3)
A 		29.9
(-2.7)
A 		156.8
(3)
A 		134
avr 86.2
(-0.1) 		22.3
(-3) 		31.2
(-2.6) 		152.3
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 114
(3)
P 		59.9
(0)
A 		61.4
(0.1)
A 		5.8
(-3)
A 		38.2
(-1.2)
A 		91.4
(1.7)
A 		108
B 77.1
(3)
A 		58.5
(1.4)
A 		52.8
(0.9)
A 		37.8
(-0.4)
A 		7.6
(-3)
A 		70.5
(2.4)
P 		70
C 63.3
(0.4)
A 		92.4
(3)
A 		55.5
(-0.2)
A 		30.8
(-2.4)
A 		24.1
(-3)
A 		80.5
(2)
P 		68
avr 84.8
(3) 		70.3
(1.6) 		56.6
(0.2) 		24.8
(-2.9) 		23.3
(-3) 		80.8
(2.6) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 24.2
(2.2)
A 		1.9
(-3)
A 		6.2
(-2)
A 		27.5
(3)
A 		26
B 24.3
(3)
A 		8.7
(-3)
A 		9.3
(-2.8)
A 		23.9
(2.8)
P 		16
C 38.4
(3)
M 		6.7
(-3)
A 		10.4
(-2.3)
A 		26.4
(0.7)
A 		32
avr 29
(3) 		5.8
(-3) 		8.6
(-2.3) 		25.9
(2.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 21
(2.7)
P 		21.3
(2.7)
A 		13.4
(0.4)
A 		1.5
(-3)
A 		11.5
(-0.1)
A 		22.2
(3)
A 		21
B 26.8
(3)
A 		19.5
(1.2)
A 		12.8
(-0.5)
A 		10
(-1.3)
A 		3.1
(-3)
A 		26.3
(2.9)
P 		24
C 23.5
(1.7)
A 		28.2
(3)
A 		14.1
(-0.8)
A 		6.2
(-3)
A 		7.8
(-2.6)
A 		26.9
(2.6)
P 		22
avr 23.8
(2.6) 		23
(2.3) 		13.4
(-0.7) 		5.9
(-3) 		7.5
(-2.5) 		25.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2301
Sequence Type Exemplar sequence
Representative Public ID C48B6.3 NCBI
Target Description C48B6.3 /REP_DB=WormBase Gene ID /WP=CE08805 /TR=O01512 /GB=AAC48163.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059570 NCBI Caenorhabditis elegans C48B6.3 (C48B6.3) mRNA, complete cds. 11/11 None
SNAP00000029806 ENSEMBL cdna:SNAP chromosome:CEL140:I:6923191:6924092:1 11/11 None
GENEFINDER00000029814 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6923191:6924092:1 11/11 None
C48B6.3.1 ENSEMBL cdna:known chromosome:CEL140:I:6923179:6924658:1 gene:C48B6.3 11/11 None
C48B6.3.2 ENSEMBL cdna:known chromosome:CEL140:I:6923181:6924658:1 gene:C48B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6923121-6924023(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B6.3
Entrez Gene 172419 Entrez gene
SwissProt O01512 EMBL-EBI
WormBase CE08805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491971 C48B6.3 [Caenorhabditis elegans] gb|AAC48163.1| Hypothetical protein C48B6.3 [Caenorhabditis elegans] 4.0E-99
blast CAE67286 Hypothetical protein CBG12734 [Caenorhabditis briggsae] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:180365_AT
gaatcatcactcgagctgttcttcgagaactggcggtgcccaccgtcgttgtgattgtac
tgaggatctgacggaaaacgataagctgtggaatgactttgaaggatgtgctcaagctgt
ggctcgtctctattcggactcctcttggagaaatttcagaggcgctgcagagggaaccac
gcagttgtacaaaacatctactgacagttatcgtcgaggatttgagaagggattttcatc
gggttgtacgagtattgccaaggaaatattacaagcatttcgagatccatccaaaattga
tatgaacatagttctcgaagtattatacagaaatatggcaattccgcgagaggaacgact
taccgtcaatactcaaaacggaatctcatccgacaccttagcggcggttgaactttttca
gcaggcactgaaccagccgcaagtcccaccgctgagcacattgagcctattgccaccgac
aactagagaacagacgacagacactttggacgagtttctcgctagtcaggttcaacgcca
ccgaaaacgtcagcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCACTCGAGCTGTTCTTCG 601 327 18 Antisense
TGCCCACCGTCGTTGTGATTGTACT 380 583 54 Antisense
TCTCTATTCGGACTCCTCTTGGAGA 487 611 144 Antisense
CAGAGGCGCTGCAGAGGGAACCACG 550 205 174 Antisense
TACAAGCATTTCGAGATCCATCCAA 233 643 287 Antisense
GAGGAACGACTTACCGTCAATACTC 1 401 367 Antisense
ATCCGACACCTTAGCGGCGGTTGAA 282 35 405 Antisense
TGAGCACATTGAGCCTATTGCCACC 476 569 470 Antisense
CAGACACTTTGGACGAGTTTCTCGC 580 203 515 Antisense
TTCTCGCTAGTCAGGTTCAACGCCA 98 689 533 Antisense
AACGCCACCGAAAACGTCAGCGATC 186 147 551 Antisense
Sequence Source Affymetrix Proprietary Database